ViewGene

Locus Name:
GeneID:
Location:

GeneID:3389
TrivialName: PA14_69620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69620
PAO1 Ortholog Locus:PA5273
Sequence Length:699
Protein Length:232
Start: 6212478
Stop: 6213176
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08658.1|AE004940_2 (AE004940) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 226/230 (98%), Positives = 227/230 (98%)
Sequence:
ATGGCACTCCTCGGTATTACCCTGCTCGCTGGCGCCGCATTCGTGGGCGGCTATCTCTACCGCCGCGGCCTG
GATCGCCGGCGCTACCGCTTCATCCAGCAATTTCGCCTGCCGCCGCGGGTCGCCCAGGCGGTCCGCGAGCGC
TATCCGCAGCTCAGCGAGGAACAGGTCCAACGAGTGCTCGGCGGCCTGCGCGAATACCTGCTGCTATGCCGC
GCCGCCGGCAAGCGGATGGTCGCGATGCCGTCCCAGGTGGTGGATGTCGCCTGGCACGAGTTGATCCTGCAT
ACCCGGCTCTACCAGCACGTCTGCCGCAAGGGACTCGGGCGCTTCCTCCACCATACGCCGGCGCAGGCGATG
CGCAGCCCCCGACAGGCCCAGGAAGGCATTCGGCGCGCCTGGAAGCTGGCTTGTCGCCGCGAAGGCATCGAC
CCCCAGAACCCCACGCGCCTACCGCTGCTGTTCGCTCTCGACACGGAACTGGCGATCGCCGACGGCTTCCGC
TACACCCTGAACTGCGCGCAGCGGCAAGACGGCGGCGCAGCGGTGTATTGCGCCAGCCATATCGGTTGCAGC
AGCGGCTGCGCCAGCGATAGCGGCAGTACCTTCGGTTCGGACGGACAGGACTCGCGCCACGGCTGCGGCGGC
GATAGCGGTGGGGACGGCGGCAGCGGTTGCGGGGGCGGTGGGGGCGACTGA
Translation:
MALLGITLLAGAAFVGGYLYRRGLDRRRYRFIQQFRLPPRVAQAVRERYPQLSEEQVQRVLGGLREYLLLCR
AAGKRMVAMPSQVVDVAWHELILHTRLYQHVCRKGLGRFLHHTPAQAMRSPRQAQEGIRRAWKLACRREGID
PQNPTRLPLLFALDTELAIADGFRYTLNCAQRQDGGAAVYCASHIGCSSGCASDSGSTFGSDGQDSRHGCGG
DSGGDGGSGCGGGGGD*
AnnotationID:3397GeneID:3389
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 08:08:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5273
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:6781
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23923
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34769
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3389_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3389

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5421 PA5273_tr translation of PA5273 237 96.20 96.62 5 1206.0
151374 gb|AAG08658.1|AE004940_2 (AE004940) hypothetical protein PA5273 [Pseudomonas aeruginosa PAO1] 237 96.20 96.62 5 1206.0
151375 emb|CAD18671.1| (AL646085) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 245 38.77 51.83 26 381.0
GC ORFID: 46391How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5273Glimmer Score:
Start: 5476165Stop: 5476863
Length: 699
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5273 translation of PA5273Homolog Bit Score 469.0
Other Homologs: t_PA5273 (ORF: GLIMMER)
GC ORF Sequence
ATGGCACTCCTCGGTATTACCCTGCTCGCTGGCGCCGCATTCGTGGGCGGCTATCTCTACCGCCGCGGCCTG
GATCGCCGGCGCTACCGCTTCATCCAGCAATTTCGCCTGCCGCCGCGGGTCGCCCAGGCGGTCCGCGAGCGC
TATCCGCAGCTCAGCGAGGAACAGGTCCAACGAGTGCTCGGCGGCCTGCGCGAATACCTGCTGCTATGCCGC
GCCGCCGGCAAGCGGATGGTCGCGATGCCGTCCCAGGTGGTGGATGTCGCCTGGCACGAGTTGATCCTGCAT
ACCCGGCTCTACCAGCACGTCTGCCGCAAGGGACTCGGGCGCTTCCTCCACCATACGCCGGCGCAGGCGATG
CGCAGCCCCCGACAGGCCCAGGAAGGCATTCGGCGCGCCTGGAAGCTGGCTTGTCGCCGCGAAGGCATCGAC
CCCCAGAACCCCACGCGCCTACCGCTGCTGTTCGCTCTCGACACGGAACTGGCGATCGCCGACGGCTTCCGC
TACACCCTGAACTGCGCGCAGCGGCAAGACGGCGGCGCAGCGGTGTATTGCGCCAGCCATATCGGTTGCAGC
AGCGGCTGCGCCAGCGATAGCGGCAGTACCTTCGGTTCGGACGGACAGGACTCGCGCCACGGCTGCGGCGGC
GATAGCGGTGGGGACGGCGGCAGCGGTTGCGGGGGCGGTGGGGGCGACTGA