ViewGene
Locus Name:
GeneID:
Location:

GeneID:3388
TrivialName: PA14_66990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66990
PAO1 Ortholog Locus:PA5071
Sequence Length:708
Protein Length:235
Start: 5979420
Stop: 5980127
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08456.1|AE004920_6 (AE004920) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 235/235 (100%), Positives = 235/235 (100%)
Sequence:
GTGAACCTGCTGCTCCTCGACGACGCCGACTTCGTGTCGGCGGATCGTGCGGTCCTGCACGATCGCCGCCTC
AAGCACCTGCACGAAGTGCACCGCGCCGAGAACGGCGACACCCTGCGGGTCGGCCGCCTCGGCGGCTGGATG
GGCGAAGGCCGCCTGCTGAAGCTCGACGCCAGCGAGGCGACCCTGGAGGTGCGCTTCGACCAGCCGCCGCCG
GCCAAGTTGCCGATCACCCTGCTGCTGGCCTTGCCGCGACCGAAGATGCTCCGCCGGGTGTTGCAGACCATC
GCCGCAATGGGCGTACCGAAGCTGGTGCTGCTGAACAGCTACCGCGTGGAAAAGAGCTTCTGGCAGACCCCG
TTCCTCGACCCGGCGGCGATCCGCGAGAACCTGGTCCTCGGCCTGGAGCAGGCCCGCGATACGGTGCTGCCG
GAAATCATCGTCGAGAAGCGCTTCAAACCCTTCGTCGAAGACCGCCTGCCGGCCCTGGCCGCCGGCAGTCTC
GGCCTGGTCGGCCATCCCGGTCCCTGGCCGGCCTGTCCGCGCGCGGTGGAGAAGCCGGTGACCCTGGCGATC
GGCCCGGAAGGCGGCTGGATTCCCTACGAGGTCGACAAGCTGCGCGAAGCCGGACTGCATCCGGTGCAGCTC
GGCGAACGCATCCTGCGCGTGGAAACCGCGGTCAGCGCCTTGCTTGCGCGGTTGTTCTGA
Translation:
MNLLLLDDADFVSADRAVLHDRRLKHLHEVHRAENGDTLRVGRLGGWMGEGRLLKLDASEATLEVRFDQPPP
AKLPITLLLALPRPKMLRRVLQTIAAMGVPKLVLLNSYRVEKSFWQTPFLDPAAIRENLVLGLEQARDTVLP
EIIVEKRFKPFVEDRLPALAAGSLGLVGHPGPWPACPRAVEKPVTLAIGPEGGWIPYEVDKLREAGLHPVQL
GERILRVETAVSALLARLF*
AnnotationID:3396GeneID:3388
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 05:05:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5071
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14819




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23921




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34938




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3388_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3388
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5420
                           PA5071_tr
                           translation of PA5071
                           235
                           99.99
                           99.99
                           0
                           1207.0
     

     
     
151369
                           gb|AAG08456.1|AE004920_6
                           (AE004920) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           235
                           99.57
                           99.99
                           0
                           1204.0
     

     
     
151370
                           gb|AAO58584.1|
                           (AE016874) conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv. tomato str. DC3000]
                           235
                           76.59
                           87.23
                           0
                           940.0
     

     
     
151371
                           gb|AAN70584.1|AE016701_4
                           (AE016792) conserved hypothetical protein TIGR00046 [Pseudomonas putida KT2440]
                           235
                           74.46
                           87.65
                           0
                           936.0
     

     
     
151372
                           emb|CAE07493.1|
                           (BX569691) conserved hypothetical protein [Synechococcus sp. WH 8102]
                           237
                           42.19
                           61.60
                           2
                           471.0
     

     






      

          
GC ORFID: 46390How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5071Glimmer Score: 

          
Start: 5243104Stop: 5243811

          
Length: 708


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5071 translation of PA5071Homolog Bit Score 469.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3802 (ORF: BLASTX 367.0), t_PA5071 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACCTGCTGCTCCTCGACGACGCCGACTTCGTGTCGGCGGATCGTGCGGTCCTGCACGATCGCCGCCTC 
AAGCACCTGCACGAAGTGCACCGCGCCGAGAACGGCGACACCCTGCGGGTCGGCCGCCTCGGCGGCTGGATG 
GGCGAAGGCCGCCTGCTGAAGCTCGACGCCAGCGAGGCGACCCTGGAGGTGCGCTTCGACCAGCCGCCGCCG 
GCCAAGTTGCCGATCACCCTGCTGCTGGCCTTGCCGCGACCGAAGATGCTCCGCCGGGTGTTGCAGACCATC 
GCCGCAATGGGCGTACCGAAGCTGGTGCTGCTGAACAGCTACCGCGTGGAAAAGAGCTTCTGGCAGACCCCG 
TTCCTCGACCCGGCGGCGATCCGCGAGAACCTGGTCCTCGGCCTGGAGCAGGCCCGCGATACGGTGCTGCCG 
GAAATCATCGTCGAGAAGCGCTTCAAACCCTTCGTCGAAGACCGCCTGCCGGCCCTGGCCGCCGGCAGTCTC 
GGCCTGGTCGGCCATCCCGGTCCCTGGCCGGCCTGTCCGCGCGCGGTGGAGAAGCCGGTGACCCTGGCGATC 
GGCCCGGAAGGCGGCTGGATTCCCTACGAGGTCGACAAGCTGCGCGAAGCCGGACTGCATCCGGTGCAGCTC 
GGCGAACGCATCCTGCGCGTGGAAACCGCGGTCAGCGCCTTGCTTGCGCGGTTGTTCTGA