ViewGene
Locus Name:
GeneID:
Location:

GeneID:3386
TrivialName: PA14_36220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36220
PAO1 Ortholog Locus:PA2203
Sequence Length:717
Protein Length:238
Start: 3226187
Stop: 3226903
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05591.1|AE004646_12 (AE004646) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 238/238 (100%), Positives = 238/238 (100%)
Sequence:
ATGTTCGGCGAACTTCTCGCCCCGCAGTACCTGCGCTGGTTGCTCGACGGCTTCCTGCTGACCCTCGGCCTT
GCCCTGCTCAGTTGCCTGCTCGCCACCCTGATCGGCGCCCCCCTGGCCATCGCCCGGCTGTCGCGCCGACGC
CTGCTGTCCTGGCCGGCGCGCGCCTACCTGGCGCTGTTCCGCAATACCCCGCTGCTGGTGCAGCTGTTCTTC
TGGTACTTCGGCGTTCCCGCGCTGCTGCCGGAAGCGCTGGTGAGCTGGCTGAACACGCCGCACGAGACGCCC
TTGCTCGACTGGCCGTCCTTCGAGTTCCTCGCCGGTGCCTGGGGGCTGACCCTCTATACCTCGGCTTTCGTC
GCCGAGGAGTTCCGCGCCGGCATCGCCTCGGTACGCCCCGAGCAGCGCGCCGCCGGCCTCGCCCTGGGGCTG
ACCCAGCGCCAGGTATGGCGCGTGGTGGTGCTGCCGCAGGCCCTGCGCACGGCCCTGCCGCCGCTGCTCGGG
CAGTACATGAATGCGCTGAAGAACTCCTCGCTGGCGATGGCCATCGGCCTGGCCGAGCTGTCCTACGCTTCG
CGCCAGGTGGAAACCGAGACCTTCAAGACCTTCCAGGCCTTCGGCATCGCCACCCTCCTCTACATCGGCGCC
ATCGCCCTGATCGAAGCCTTCGGCCAGGCGTTGCAGCAGACCCGCCGCTACCGCCAGGGAGGTGCCTGA
Translation:
MFGELLAPQYLRWLLDGFLLTLGLALLSCLLATLIGAPLAIARLSRRRLLSWPARAYLALFRNTPLLVQLFF
WYFGVPALLPEALVSWLNTPHETPLLDWPSFEFLAGAWGLTLYTSAFVAEEFRAGIASVRPEQRAAGLALGL
TQRQVWRVVVLPQALRTALPPLLGQYMNALKNSSLAMAIGLAELSYASRQVETETFKTFQAFGIATLLYIGA
IALIEAFGQALQQTRRYRQGGA*
AnnotationID:3394GeneID:3386
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 14:02:01
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid permease
Cell Localization:()
Synonyms:gltJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative glutamate/aspartate ABC transport system permease protein
Functional Category Confidence Code:5
COGs:COG0765,COG4160,COG4215
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM87666.1|AE014013_11 (AE014013) putative glutamate/aspartate ABC transport system
           permease protein [Yersinia pestis KIM]
          Length = 245

 Score =  276 bits (707), Expect = 6e-74
 Identities = 150/229 (65%), Positives = 171/229 (74%), Gaps = 4/229 (1%)








 
Structural Features:
COG0765, HisM, ABC-type amino acid transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 222 residues,  98.2% aligned
Score =  182 bits (464), Expect = 3e-47
Identities = 96/237 (40%), Positives = 132/237 (55%), Gaps = 19/237 (8%)

COG4160, ArtM, ABC-type arginine/histidine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 228 residues,  89.9% aligned
Score =  130 bits (328), Expect = 2e-31
Identities = 75/215 (34%), Positives = 117/215 (54%), Gaps = 12/215 (5%)

COG4215, ArtQ, ABC-type arginine transport system, permease component 
CD-Length = 230 residues,  94.3% aligned
Score =  112 bits (281), Expect = 5e-26
[Amino acid transport and metabolism]
Identities = 72/223 (32%), Positives = 108/223 (48%), Gaps = 6/223 (2%)









   
Genomic Context:






   
Comment:


















    ReferenceID:6775




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23917




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32551




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3386_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3386
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5416
                           PA2203_tr
                           translation of PA2203
                           238
                           99.99
                           99.99
                           0
                           1207.0
     

     
     
151303
                           gb|AAG05591.1|AE004646_12
                           (AE004646) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           238
                           99.99
                           99.99
                           0
                           1207.0
     

     
     
151304
                           gb|AAM87666.1|AE014013_11
                           (AE014013) putative glutamate/aspartate ABC transport system permease protein [Yersinia pestis KIM]
                           247
                           61.13
                           70.04
                           11
                           701.0
     

     
     
151305
                           emb|CAC93559.1|
                           (AJ414160) ABC transporter permease [Yersinia pestis CO92]
                           247
                           61.13
                           70.04
                           11
                           701.0
     

     
     
151306
                           emb|CAE12515.1|
                           (BX571859) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           250
                           58.00
                           70.00
                           17
                           697.0
     

     






      

          
GC ORFID: 46388How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2203Glimmer Score: 

          
Start: 1727729Stop: 1727013

          
Length: 717


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2203 translation of PA2203Homolog Bit Score 469.0

          
Other Homologs:  t_PA4194 (ORF: BLASTX 159.0), t_PA1341 (ORF: BLASTX 147.0), t_PA2203 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGGCGAACTTCTCGCCCCGCAGTACCTGCGCTGGTTGCTCGACGGCTTCCTGCTGACCCTCGGCCTT 
GCCCTGCTCAGTTGCCTGCTCGCCACCCTGATCGGCGCCCCCCTGGCCATCGCCCGGCTGTCGCGCCGACGC 
CTGCTGTCCTGGCCGGCGCGCGCCTACCTGGCGCTGTTCCGCAATACCCCGCTGCTGGTGCAGCTGTTCTTC 
TGGTACTTCGGCGTTCCCGCGCTGCTGCCGGAAGCGCTGGTGAGCTGGCTGAACACGCCGCACGAGACGCCC 
TTGCTCGACTGGCCGTCCTTCGAGTTCCTCGCCGGTGCCTGGGGGCTGACCCTCTATACCTCGGCTTTCGTC 
GCCGAGGAGTTCCGCGCCGGCATCGCCTCGGTACGCCCCGAGCAGCGCGCCGCCGGCCTCGCCCTGGGGCTG 
ACCCAGCGCCAGGTATGGCGCGTGGTGGTGCTGCCGCAGGCCCTGCGCACGGCCCTGCCGCCGCTGCTCGGG 
CAGTACATGAATGCGCTGAAGAACTCCTCGCTGGCGATGGCCATCGGCCTGGCCGAGCTGTCCTACGCTTCG 
CGCCAGGTGGAAACCGAGACCTTCAAGACCTTCCAGGCCTTCGGCATCGCCACCCTCCTCTACATCGGCGCC 
ATCGCCCTGATCGAAGCCTTCGGCCAGGCGTTGCAGCAGACCCGCCGCTACCGCCAGGGAGGTGCCTGA