ViewGene
Locus Name:
GeneID:
Location:

GeneID:3385
TrivialName: PA14_52010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52010
PAO1 Ortholog Locus:PA0947
Sequence Length:705
Protein Length:234
Start: 4616280
Stop: 4615576
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04336.1|AE004529_2 (AE004529) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 234/234 (100%), Positives = 234/234 (100%)
Sequence:
ATGAAACCTATTCAGCTTCCCCTCAGTGTGCGTCTGCGCGACGACGCCACCTTCGCCAACTACTATCCCGGT
GCCAATGCCGCGGCACTGGGATATGTCGAGCGTTTGTGCGAAGCCGAGGCTGGCTGGGCGGAAAGCCTCATC
TACCTCTGGGGACACGACGGCGTCGGTCGCAGCCACCTGTTGCAGGCGGCCTGCTTGCGTTTCGAGCAGTTC
GAAGAGCGAACCATCTACCTGCCGATGGCAGATCTGGTGCAGTACGGCCCGGAAATCTTCGACGATCTCGAG
CAGTGCGAGCTGGTCTGCATCGACGACCTGGATGTGCTGGTTGGCAAGCGAGAGTGGGAAGAGGGGCTGTTC
CACCTGTTCAATCGACTGCGCGATACCGGTCGGCGCCTGCTGCTGGCGGCATCGAAGTCGCCCCGGGAGCTG
CAGGTCAAGCTGCCGGACCTGAAGTCCCGCCTCACCATGGCGCTGATCTTCCAGTTGCACGGTCTTTCCGAC
GAGGACAAGCTTCGTGCCCTGCAACTGCGGGCATCCCGTCGTGGCTTGCATCTGACCGATGAAGTCGGTCGT
TTCATCCTCAACCGCGGTTCGCGCAGCATGAACTCTCTGTTCGATCTGCTGGAGCAACTGGATCGCGCTTCG
CTCCAGGCTCAGCGCAAGCTGACCATTCCTTTCCTCAAGGAAACCCTCGGCTGGTAG
Translation:
MKPIQLPLSVRLRDDATFANYYPGANAAALGYVERLCEAEAGWAESLIYLWGHDGVGRSHLLQAACLRFEQF
EERTIYLPMADLVQYGPEIFDDLEQCELVCIDDLDVLVGKREWEEGLFHLFNRLRDTGRRLLLAASKSPREL
QVKLPDLKSRLTMALIFQLHGLSDEDKLRALQLRASRRGLHLTDEVGRFILNRGSRSMNSLFDLLEQLDRAS
LQAQRKLTIPFLKETLGW*
AnnotationID:3393GeneID:3385
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 14:02:49
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0947
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0593
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Some homology to N-terminal 74% of bacterial DnaB, ATPase involved in DNA replication.






 
Structural Features:
COG0593, DnaA, ATPase involved in DNA replication initiation.
     CD-Length = 408 residues, only  59.8% aligned
      Score =  199 bits (508), Expect = 2e-52






   
Genomic Context:






   
Comment:


















    ReferenceID:6773




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23915




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3385
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5415
                           PA0947_tr
                           translation of PA0947
                           234
                           99.99
                           99.99
                           0
                           1208.0
     

     
     
151283
                           gb|AAG04336.1|AE004529_2
                           (AE004529) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           234
                           99.99
                           99.99
                           0
                           1208.0
     

     
     
151284
                           gb|AAO55223.1|
                           (AE016861) DnaA family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           234
                           81.62
                           91.02
                           0
                           1008.0
     

     
     
151285
                           gb|AAN67289.1|AE016355_7
                           (AE016780) DnaA family protein [Pseudomonas putida KT2440]
                           235
                           79.57
                           87.65
                           1
                           958.0
     

     
     
151286
                           gb|AAM84982.1|AE013744_5
                           (AE013744) putative DNA replication factor [Yersinia pestis KIM]
                           242
                           45.86
                           61.98
                           11
                           544.0
     

     






      

          
GC ORFID: 46387How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0947Glimmer Score: 

          
Start: 337627Stop: 338331

          
Length: 705


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0947 translation of PA0947Homolog Bit Score 469.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6463 (ORF: BLASTX 401.0), t_PA0947 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACCTATTCAGCTTCCCCTCAGTGTGCGTCTGCGCGACGACGCCACCTTCGCCAACTACTATCCCGGT 
GCCAATGCCGCGGCACTGGGATATGTCGAGCGTTTGTGCGAAGCCGAGGCTGGCTGGGCGGAAAGCCTCATC 
TACCTCTGGGGACACGACGGCGTCGGTCGCAGCCACCTGTTGCAGGCGGCCTGCTTGCGTTTCGAGCAGTTC 
GAAGAGCGAACCATCTACCTGCCGATGGCAGATCTGGTGCAGTACGGCCCGGAAATCTTCGACGATCTCGAG 
CAGTGCGAGCTGGTCTGCATCGACGACCTGGATGTGCTGGTTGGCAAGCGAGAGTGGGAAGAGGGGCTGTTC 
CACCTGTTCAATCGACTGCGCGATACCGGTCGGCGCCTGCTGCTGGCGGCATCGAAGTCGCCCCGGGAGCTG 
CAGGTCAAGCTGCCGGACCTGAAGTCCCGCCTCACCATGGCGCTGATCTTCCAGTTGCACGGTCTTTCCGAC 
GAGGACAAGCTTCGTGCCCTGCAACTGCGGGCATCCCGTCGTGGCTTGCATCTGACCGATGAAGTCGGTCGT 
TTCATCCTCAACCGCGGTTCGCGCAGCATGAACTCTCTGTTCGATCTGCTGGAGCAACTGGATCGCGCTTCG 
CTCCAGGCTCAGCGCAAGCTGACCATTCCTTTCCTCAAGGAAACCCTCGGCTGGTAG