ViewGene
Locus Name:
GeneID:
Location:

GeneID:3384
TrivialName: PA14_59760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59760
PAO1 Ortholog Locus:
Sequence Length:717
Protein Length:238
Start: 5318840
Stop: 5319556
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84167.1| (AY273869) putative pili assembly chaperone [Pseudomonas aeruginosa]
Identities = 238/238 (100%), Positives = 238/238 (100%)
Sequence:
GTGTCCAGTAAGATCCTGCTGCAAGGGGCACTGCTCGGCCTAGCAATGCTGGCCGTGCTGGACGCCCGAGCC
GGAGTCACCGCCGAGCGCACTCGGGCAATAATCGCCGAGGGGCACCGCGAGACGTCGCTGCTGCTGGTCAAC
CAGAATGCCTATCCGGTCATAGTGCAGACCTGGATCGACGATGGCGCCCCGAACTCGACACCGCAGTCTGCC
CGCGCGCCGATCATGCCGCTACCGCCGGTGTTCCGCCTCGAACCCGGACAGCAACGCAGCCTGCGCCTGCTG
CGGACCGGCCAGGCGCTGCCAGGGGACCGCGAATCGCTGTACTGGTTGAACCTCTACGAAATCCCGCCGCAA
GCCACCGGGCTGCTGGCCGAAGGACAGTCACGGCTGACCGTTACACTGCGCACCCAGATGAAAGTCATCTAC
CGCCCTCGCCCTCTGGCCAGAGGGGCGGAAGAAGCGCCACACCAGCTCAGGTTCGAGCGGCGGGGCGAAACA
CTACAGATGGAGAACCCTACTCCCTATTTCATCAGCCTCGCCGGCGCCGAGCTTGGCGGCCACACCCGCCTG
GCGGCGGCCGAACTGTTGCCCCCCTTCTCCAGGCGCGTCCTGGCGCTCCGCCAGGCGCTGCCCGGCGGCCAG
GCCGAGGTGCGCTTCAGCTGGATCGATGACGGCGGCAATCTCCAGCAGGGACGGAGCCTGCTTCACTGA
Translation:
MSSKILLQGALLGLAMLAVLDARAGVTAERTRAIIAEGHRETSLLLVNQNAYPVIVQTWIDDGAPNSTPQSA
RAPIMPLPPVFRLEPGQQRSLRLLRTGQALPGDRESLYWLNLYEIPPQATGLLAEGQSRLTVTLRTQMKVIY
RPRPLARGAEEAPHQLRFERRGETLQMENPTPYFISLAGAELGGHTRLAAAELLPPFSRRVLALRQALPGGQ
AEVRFSWIDDGGNLQQGRSLLH*
AnnotationID:3392GeneID:3384
AnnotatorUID: diggins
Modification Date/Time: 2006-01-30 21:09:43
Gene Name:cupD5
Confidence Code:3
GeneProduct:putative pili assembly chaperone
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3121,pfam00345
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC93348.1| (AJ414159) putative chaperone protein [Yersinia pestis CO92]
          Length = 248

 Score =  171 bits (432), Expect = 4e-42
 Identities = 103/232 (44%), Positives = 138/232 (59%), Gaps = 10/232 (4%)

>emb|CAE42164.1| (BX640416) chaperone protein [Bordetella pertussis]
          Length = 244

 Score =  135 bits (340), Expect = 2e-31
 Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 14/230 (6%)







 
Structural Features:
COG3121, FimC, P pilus assembly protein, chaperone PapD 
[Cell motility and secretion / Intracellular trafficking and secretion].
CD-Length = 235 residues,  98.7% aligned
Score =  194 bits (493), Expect = 1e-50
Identities = 97/239 (40%), Positives = 131/239 (54%), Gaps = 9/239 (3%)

pfam00345, Pili_assembly_N, Gram-negative pili assembly chaperone, 
N-terminal domain. 
CD-Length = 122 residues, 100.0% aligned
Score =  126 bits (318), Expect = 2e-30
Identities = 52/126 (41%), Positives = 76/126 (60%), Gaps = 4/126 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14817




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23913




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38292




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3384_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3384
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
151274
                           gb|AAP84167.1|
                           (AY273869) putative pili assembly chaperone [Pseudomonas aeruginosa]
                           238
                           99.57
                           99.99
                           0
                           1206.0
     

     
     
5414
                           PA2132_tr
                           translation of PA2132
                           241
                           60.16
                           70.12
                           7
                           651.0
     

     
     
151275
                           gb|AAG05520.1|AE004640_9
                           (AE004640) chaperone CupA5 [Pseudomonas aeruginosa PAO1]
                           245
                           57.55
                           67.75
                           15
                           648.0
     

     
     
151277
                           emb|CAC93348.1|
                           (AJ414159) putative chaperone protein [Yersinia pestis CO92]
                           254
                           42.12
                           56.69
                           22
                           443.0
     

     
     
151276
                           gb|AAM83938.1|AE013635_3
                           (AE013635) putative pilus chaperone, PapD family [Yersinia pestis KIM]
                           278
                           38.48
                           51.79
                           46
                           443.0
     

     






      

          
GC ORFID: 46386How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL040Glimmer Score: 

          
Start: 4582519Stop: 4583235

          
Length: 717


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL040 CupA5 238 Homolog: PA2132 / Probable pili assembly chaperone; Biofilm-related / P.aeruginosa / PA01 (AAG05520) translation of RL040Homolog Bit Score 470.0

          
Other Homologs:  t_PA2132 (ORF: BLASTX 251.0), t_RL040 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGTCCAGTAAGATCCTGCTGCAAGGGGCACTGCTCGGCCTAGCAATGCTGGCCGTGCTGGACGCCCGAGCC 
GGAGTCACCGCCGAGCGCACTCGGGCAATAATCGCCGAGGGGCACCGCGAGACGTCGCTGCTGCTGGTCAAC 
CAGAATGCCTATCCGGTCATAGTGCAGACCTGGATCGACGATGGCGCCCCGAACTCGACACCGCAGTCTGCC 
CGCGCGCCGATCATGCCGCTACCGCCGGTGTTCCGCCTCGAACCCGGACAGCAACGCAGCCTGCGCCTGCTG 
CGGACCGGCCAGGCGCTGCCAGGGGACCGCGAATCGCTGTACTGGTTGAACCTCTACGAAATCCCGCCGCAA 
GCCACCGGGCTGCTGGCCGAAGGACAGTCACGGCTGACCGTTACACTGCGCACCCAGATGAAAGTCATCTAC 
CGCCCTCGCCCTCTGGCCAGAGGGGCGGAAGAAGCGCCACACCAGCTCAGGTTCGAGCGGCGGGGCGAAACA 
CTACAGATGGAGAACCCTACTCCCTATTTCATCAGCCTCGCCGGCGCCGAGCTTGGCGGCCACACCCGCCTG 
GCGGCGGCCGAACTGTTGCCCCCCTTCTCCAGGCGCGTCCTGGCGCTCCGCCAGGCGCTGCCCGGCGGCCAG 
GCCGAGGTGCGCTTCAGCTGGATCGATGACGGCGGCAATCTCCAGCAGGGACGGAGCCTGCTTCACTGA