ViewGene
Locus Name:
GeneID:
Location:

GeneID:3383
TrivialName: PA14_22840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22840
PAO1 Ortholog Locus:PA3198
Sequence Length:753
Protein Length:250
Start: 1982710
Stop: 1983462
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06586.1|AE004744_1 (AE004744) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 249/250 (99%), Positives = 250/250 (100%)
Sequence:
CTGGAGGTCTTCCTCGAGGCCTTCGAGGGCCCGCTCGACCTGCTGCTGTACCTGATCCGCAAGCAGAACATC
GACATCCTGGATATCCCGGTGGCGGAAATCACCCGCCAGTACATGGGCTATGTCGAGCTGATGAAGGCGGTG
CGCCTGGAGCTGGCCGCCGAGTACCTGGTGATGGCGGCGATGCTGGCGGAGATCAAGTCGCGCATGTTGTTG
CCGCGCTCGGCGGAAGCCGAGGAGGAAGAGGACGATCCGCGGGCCGAGCTGATCCGCCGCCTGCAAGAGTAC
GAACGGTTCAAGAAGGCCGCCGAAGACCTCGACGAACTGCCCCGGGTCGGCCGCGACGTGCTGGTGCCGGCG
GTGGCTGCTCCCGAGGCGCGGGCGCGCAAGCTGCTGCCGGAGCTGGCGCTGCAGGAGCTGATGCTGGTGATG
GGCGAGATGCTGCGCCGCGCCGACCTGTTCGAGAGCCACCAGGTGACCCGCGAGGTACTGTCCACCCGCGAA
CGCATGAGCGAAGTGCTGGAGCGCCTGAAAGGCGGCGCCTTCGTGCCCTTCATCCAGTTGTTCACCCTGGAG
GAGGGCAAGCTCGGCGTGGTGGTCACCTTCATGGCGATCCTCGAACTGGTCAAGGAGCAGATGGTGGAACTG
GTGCAGAACGAGGCTTTCGGCGCCATCCATGTGCGCCTGCGGATAGCCCGCGAAGCGGAGGAAGGCGAAACC
CTGGAGGAAGCCCTGGAAGACGATTTCGAGTGA
Translation:
MEVFLEAFEGPLDLLLYLIRKQNIDILDIPVAEITRQYMGYVELMKAVRLELAAEYLVMAAMLAEIKSRMLL
PRSAEAEEEEDDPRAELIRRLQEYERFKKAAEDLDELPRVGRDVLVPAVAAPEARARKLLPELALQELMLVM
GEMLRRADLFESHQVTREVLSTRERMSEVLERLKGGAFVPFIQLFTLEEGKLGVVVTFMAILELVKEQMVEL
VQNEAFGAIHVRLRIAREAEEGETLEEALEDDFE*
AnnotationID:3391GeneID:3383
AnnotatorUID: diggins
Modification Date/Time: 2004-05-26 14:02:28
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:ypuG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14815




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23911




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32345




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3383_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3383
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5413
                           PA3198_tr
                           translation of PA3198
                           250
                           99.60
                           99.99
                           0
                           1209.0
     

     
     
151252
                           gb|AAG06586.1|AE004744_1
                           (AE004744) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           250
                           99.20
                           99.99
                           0
                           1207.0
     

     
     
151254
                           gb|AAO55332.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           290
                           65.51
                           72.06
                           58
                           945.0
     

     
     
151253
                           gb|AAN70072.1|AE016647_2
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           306
                           63.72
                           70.58
                           67
                           963.0
     

     
     
151255
                           gb|AAM41492.1|
                           (AE012329) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           284
                           51.76
                           65.49
                           39
                           722.0
     

     






      

          
GC ORFID: 46385How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3198Glimmer Score: 

          
Start: 2971221Stop: 2970469

          
Length: 753


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3198 translation of PA3198Homolog Bit Score 470.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2044 (ORF: BLASTX 406.0), t_PA3198 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGGAGGTCTTCCTCGAGGCCTTCGAGGGCCCGCTCGACCTGCTGCTGTACCTGATCCGCAAGCAGAACATC 
GACATCCTGGATATCCCGGTGGCGGAAATCACCCGCCAGTACATGGGCTATGTCGAGCTGATGAAGGCGGTG 
CGCCTGGAGCTGGCCGCCGAGTACCTGGTGATGGCGGCGATGCTGGCGGAGATCAAGTCGCGCATGTTGTTG 
CCGCGCTCGGCGGAAGCCGAGGAGGAAGAGGACGATCCGCGGGCCGAGCTGATCCGCCGCCTGCAAGAGTAC 
GAACGGTTCAAGAAGGCCGCCGAAGACCTCGACGAACTGCCCCGGGTCGGCCGCGACGTGCTGGTGCCGGCG 
GTGGCTGCTCCCGAGGCGCGGGCGCGCAAGCTGCTGCCGGAGCTGGCGCTGCAGGAGCTGATGCTGGTGATG 
GGCGAGATGCTGCGCCGCGCCGACCTGTTCGAGAGCCACCAGGTGACCCGCGAGGTACTGTCCACCCGCGAA 
CGCATGAGCGAAGTGCTGGAGCGCCTGAAAGGCGGCGCCTTCGTGCCCTTCATCCAGTTGTTCACCCTGGAG 
GAGGGCAAGCTCGGCGTGGTGGTCACCTTCATGGCGATCCTCGAACTGGTCAAGGAGCAGATGGTGGAACTG 
GTGCAGAACGAGGCTTTCGGCGCCATCCATGTGCGCCTGCGGATAGCCCGCGAAGCGGAGGAAGGCGAAACC 
CTGGAGGAAGCCCTGGAAGACGATTTCGAGTGA