ViewGene
Locus Name:
GeneID:
Location:

GeneID:3382
TrivialName: PA14_46850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46850
PAO1 Ortholog Locus:PA1347
Sequence Length:693
Protein Length:230
Start: 4172017
Stop: 4172709
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04736.1|AE004564_5 (AE004564) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 230/230 (100%), Positives = 230/230 (100%)
Sequence:
ATGACGCTATTGGATATCGAAAAGCTGCTGGACATGACTCACCACATGTCGGTGCACATTCCCATCGAACTG
ATCATTTCCTGGGAGCAGAGCGAAGAGGCCTGGAGTGTGAAAGACAACTGTCTCAACTTCGTCTATGTCAAT
CGTCGCTATACCGAACTGATCACCCCGCGGTTCGGCCAGAAGAACTCCCTGCTATCCCCCTTCAGTGCCAGC
ATCGAAGAGCACGACAAGCTGGTCATCCAGACCGGCAAGCGCATCGAGGCCCTGGCGCTGCTCAGGCCGGAC
GATCATCCGGCGCCCTGCTGCCTGTATTTCGAACGCATGCCGCTGTATGACCGGCGCGGCAACCGCACCGGG
GTGATCGCCCATGCCAAGACCCTGACCTCGGTCGCCCCGCGCGGCTTCATCGCCACCGACGGCATCGGTACC
TTCACCTTCACGCCCCCCTCGGAGTTGTTCACCTCGCGCGAATGGGACGTGATCTACCTGCTGCTTTCCGGT
CTCTCGGAAAAAGAAATAGCCGAACAGATCAGCCGCTCCCTGAGTACCGTCAAGTTTCACAAGAGCAACATC
TTCCAGAAGGTCGGTTGCAGTTGCATCGGCGCCTTCAAGGCACTCGCCCGGCAAAAGAAGTGGAACTTCTAT
ATCCCGCCGACCTTCGCCAGCGCCAAGTACATCATCAATCACTAG
Translation:
MTLLDIEKLLDMTHHMSVHIPIELIISWEQSEEAWSVKDNCLNFVYVNRRYTELITPRFGQKNSLLSPFSAS
IEEHDKLVIQTGKRIEALALLRPDDHPAPCCLYFERMPLYDRRGNRTGVIAHAKTLTSVAPRGFIATDGIGT
FTFTPPSELFTSREWDVIYLLLSGLSEKEIAEQISRSLSTVKFHKSNIFQKVGCSCIGAFKALARQKKWNFY
IPPTFASAKYIINH*
AnnotationID:3390GeneID:3382
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 09:09:55
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA1347
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00421,pfam00196
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon
CD-Length = 58 residues,  82.8% aligned
Score = 56.3 bits (136), Expect = 3e-09
Identities = 22/48 (45%), Positives = 30/48 (62%)

pfam00196, GerE, Bacterial regulatory proteins, luxR family.
CD-Length = 58 residues,  79.3% aligned
Score = 52.9 bits (127), Expect = 3e-08
Identities = 20/46 (43%), Positives = 29/46 (63%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6767




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23909




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37441




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3382_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3382
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5412
                           PA1347_tr
                           translation of PA1347
                           230
                           99.99
                           99.99
                           0
                           1209.0
     

     
     
151251
                           gb|AAG04736.1|AE004564_5
                           (AE004564) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           230
                           99.99
                           99.99
                           0
                           1209.0
     

     






      

          
GC ORFID: 46384How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1347Glimmer Score: 

          
Start: 781892Stop: 781200

          
Length: 693


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1347 translation of PA1347Homolog Bit Score 470.0

          
Other Homologs:  t_PA1347 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCTATTGGATATCGAAAAGCTGCTGGACATGACTCACCACATGTCGGTGCACATTCCCATCGAACTG 
ATCATTTCCTGGGAGCAGAGCGAAGAGGCCTGGAGTGTGAAAGACAACTGTCTCAACTTCGTCTATGTCAAT 
CGTCGCTATACCGAACTGATCACCCCGCGGTTCGGCCAGAAGAACTCCCTGCTATCCCCCTTCAGTGCCAGC 
ATCGAAGAGCACGACAAGCTGGTCATCCAGACCGGCAAGCGCATCGAGGCCCTGGCGCTGCTCAGGCCGGAC 
GATCATCCGGCGCCCTGCTGCCTGTATTTCGAACGCATGCCGCTGTATGACCGGCGCGGCAACCGCACCGGG 
GTGATCGCCCATGCCAAGACCCTGACCTCGGTCGCCCCGCGCGGCTTCATCGCCACCGACGGCATCGGTACC 
TTCACCTTCACGCCCCCCTCGGAGTTGTTCACCTCGCGCGAATGGGACGTGATCTACCTGCTGCTTTCCGGT 
CTCTCGGAAAAAGAAATAGCCGAACAGATCAGCCGCTCCCTGAGTACCGTCAAGTTTCACAAGAGCAACATC 
TTCCAGAAGGTCGGTTGCAGTTGCATCGGCGCCTTCAAGGCACTCGCCCGGCAAAAGAAGTGGAACTTCTAT 
ATCCCGCCGACCTTCGCCAGCGCCAAGTACATCATCAATCACTAG