ViewGene

Locus Name:
GeneID:
Location:

GeneID:3381
TrivialName: PA14_46840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46840
PAO1 Ortholog Locus:PA1348
Sequence Length:708
Protein Length:235
Start: 4171951
Stop: 4171244
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04737.1|AE004564_6 (AE004564) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 231/235 (98%), Positives = 231/235 (98%)
Sequence:
GTGCCGGGATGTTCGTTGGGTCCTGCGGAAGTTTCTCTGGCAAGTGCTATCTTCTTTTCGGTGGCGTTCGAC
TCCTGCGTCTGCGAAGTGTTACCGGAGCAACTACGCCGGAGCGCAATTCGATTTCAGGTTATATCCGCGACC
TCATGCCCAGGCTGTACTTTTGATCGAGTTTTTTTGCGCTGTTCTAATAGGGGGCGGGCGCGTTGTTCGAAA
AGTCGATTGACAGCTGACGGAGGTGGCCAGGGTCCTATCGAACAATTCCAGGAATTCCCTTTTTCCAATGCG
CGATGCCGCTGGTCCGTACTTCGCTCGCCGGGGCCGTTGCGCGGCTATGGTGGAAGTCCCGAGGCCTATCGA
GGCTTTGTCATGTCGCGTGTGCTTTTCCTGCTCCTGGCCATGGTGCTCGCCGGCCTGGGCCAACCGACCCTC
GCCGCGCCCCTGCCGGACGAGCTGCCGGCAGCCTTGCCCGCCGCGCCGCCGGTCGCGCCGTTGCCCATGGGC
GGCGCGCCACAGCCGCAACCGGAGGCCGCCGAGCCGGACCTGCCGGGCAGCGACGCGGCCAGCGCCGACGGG
GAGGCGACGACCAAGGACGGCTTGAAGATCGGCAACGGCAGTCTCCGCCTGCGCCAGGACGATCCCGGGCCG
ACCCGGGAAAGCCCGCTGCGCGATCCCCGCCTGAATCCCTACGCACCGCGCCAGCCCTGA
Translation:
MPGCSLGPAEVSLASAIFFSVAFDSCVCEVLPEQLRRSAIRFQVISATSCPGCTFDRVFLRCSNRGRARCSK
SRLTADGGGQGPIEQFQEFPFSNARCRWSVLRSPGPLRGYGGSPEAYRGFVMSRVLFLLLAMVLAGLGQPTL
AAPLPDELPAALPAAPPVAPLPMGGAPQPQPEAAEPDLPGSDAASADGEATTKDGLKIGNGSLRLRQDDPGP
TRESPLRDPRLNPYAPRQP*
AnnotationID:3389GeneID:3381
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 08:08:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1348
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:14813
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23907
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3381

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5411 PA1348_tr translation of PA1348 235 98.29 98.29 0 1210.0
151250 gb|AAG04737.1|AE004564_6 (AE004564) hypothetical protein PA1348 [Pseudomonas aeruginosa PAO1] 235 97.87 98.29 0 1207.0
GC ORFID: 46383How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1348Glimmer Score:
Start: 781958Stop: 782665
Length: 708
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1348 translation of PA1348Homolog Bit Score 470.0
Other Homologs: t_PA1348 (ORF: GLIMMER)
GC ORF Sequence
GTGCCGGGATGTTCGTTGGGTCCTGCGGAAGTTTCTCTGGCAAGTGCTATCTTCTTTTCGGTGGCGTTCGAC
TCCTGCGTCTGCGAAGTGTTACCGGAGCAACTACGCCGGAGCGCAATTCGATTTCAGGTTATATCCGCGACC
TCATGCCCAGGCTGTACTTTTGATCGAGTTTTTTTGCGCTGTTCTAATAGGGGGCGGGCGCGTTGTTCGAAA
AGTCGATTGACAGCTGACGGAGGTGGCCAGGGTCCTATCGAACAATTCCAGGAATTCCCTTTTTCCAATGCG
CGATGCCGCTGGTCCGTACTTCGCTCGCCGGGGCCGTTGCGCGGCTATGGTGGAAGTCCCGAGGCCTATCGA
GGCTTTGTCATGTCGCGTGTGCTTTTCCTGCTCCTGGCCATGGTGCTCGCCGGCCTGGGCCAACCGACCCTC
GCCGCGCCCCTGCCGGACGAGCTGCCGGCAGCCTTGCCCGCCGCGCCGCCGGTCGCGCCGTTGCCCATGGGC
GGCGCGCCACAGCCGCAACCGGAGGCCGCCGAGCCGGACCTGCCGGGCAGCGACGCGGCCAGCGCCGACGGG
GAGGCGACGACCAAGGACGGCTTGAAGATCGGCAACGGCAGTCTCCGCCTGCGCCAGGACGATCCCGGGCCG
ACCCGGGAAAGCCCGCTGCGCGATCCCCGCCTGAATCCCTACGCACCGCGCCAGCCCTGA