ViewGene
Locus Name:
GeneID:
Location:

GeneID:3380
TrivialName: PA14_50030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50030
PAO1 Ortholog Locus:PA1110
Sequence Length:711
Protein Length:236
Start: 4447127
Stop: 4447837
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04499.1|AE004541_4 (AE004541) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 234/236 (99%), Positives = 234/236 (99%)
Sequence:
ATGACCGACCCGATCCGCCTGTCCAAACGCCTCGCCGAACTCACCGCCTGCTCGCGCCGCGAAGCCGAGCTG
TACATCGAGGGCGGCTGGGTCAGCGTCGACGGCGAAGTGATCGAGGAGCCACAGTTCAAGGTGCTCGACCAG
CGCGTGGAGCTGCTGCCGGGCGCCCGCGCGGAAACGATCGAACCGGCCACCCTGCTGTTGCACAAGCCGGCC
GGCTGGCGCCACGACGATTTCGAAGGCCTGCTCGCTGCGGGGCGGCGCTGGAGCGATGACCCCAGTCCCTTG
CGAGCGCTGAAAAAACACTTCGCCCGCCAGCGTCCCACCCTGGCGCTGGACAGCGAGGCTTCCGGGCTGGTG
GTGTTCAGCCAGCAGCACGGCGTACTGCGCAAGCTGGTGGACGACGGTGCACGGCTGGAGCAGGAATACCTG
GTCGAGGTCGCCGGCGACCTGGCCGCCGGCGGCCTCGAGCGCCTGCGCCACGGCCTCGCCTACCAGGGCCGC
AGGCTATCGCCGTGCAAGGTCAGTTGGCAGAACGAAAGCCACCTGCGCTTCGCCCTCAAAGACGTGCTGCCC
GGCCAGTTGCGCTTCATGTGCGAAAGCGAGGGGCTGGAAGTGCGGAGCATCCGCCGCCTGCGCATCGGCGCG
CTGCCGCTGGCCAGGCTACCGCTCGGCGAATGGCGCTACCTCGGCCTCCACGAACGCTTCTGA
Translation:
MTDPIRLSKRLAELTACSRREAELYIEGGWVSVDGEVIEEPQFKVLDQRVELLPGARAETIEPATLLLHKPA
GWRHDDFEGLLAAGRRWSDDPSPLRALKKHFARQRPTLALDSEASGLVVFSQQHGVLRKLVDDGARLEQEYL
VEVAGDLAAGGLERLRHGLAYQGRRLSPCKVSWQNESHLRFALKDVLPGQLRFMCESEGLEVRSIRRLRIGA
LPLARLPLGEWRYLGLHERF*
AnnotationID:3388GeneID:3380
AnnotatorUID: danlee
Modification Date/Time: 2004-06-23 13:01:44
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1110
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate 
synthases [Translation, ribosomal structure and biogenesis]
             CD-Length = 248 residues,  96.4% aligned
             Score =  187 bits (477), Expect = 8e-49






   
Genomic Context:






   
Comment:


















    ReferenceID:6763




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23905




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3380
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5410
                           PA1110_tr
                           translation of PA1110
                           236
                           99.15
                           99.15
                           0
                           1210.0
     

     
     
151241
                           gb|AAG04499.1|AE004541_4
                           (AE004541) hypothetical protein PA1110 [Pseudomonas aeruginosa PAO1]
                           236
                           99.15
                           99.15
                           0
                           1210.0
     

     
     
151243
                           gb|AAM37974.1|
                           (AE011957) pseudouridylate synthase [Xanthomonas axonopodis pv. citri str. 306]
                           236
                           56.35
                           66.52
                           0
                           631.0
     

     
     
151244
                           gb|AAM42223.1|
                           (AE012410) pseudouridylate synthase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           236
                           55.08
                           66.10
                           0
                           626.0
     

     
     
151245
                           gb|AAN66815.1|AE016310_7
                           (AE016778) S4 domain protein [Pseudomonas putida KT2440]
                           236
                           52.54
                           65.67
                           0
                           607.0
     

     






      

          
GC ORFID: 46382How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1110Glimmer Score: 

          
Start: 506781Stop: 506071

          
Length: 711


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1110 translation of PA1110Homolog Bit Score 470.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4771 (ORF: BLASTX 259.0), t_PA1110 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGACCCGATCCGCCTGTCCAAACGCCTCGCCGAACTCACCGCCTGCTCGCGCCGCGAAGCCGAGCTG 
TACATCGAGGGCGGCTGGGTCAGCGTCGACGGCGAAGTGATCGAGGAGCCACAGTTCAAGGTGCTCGACCAG 
CGCGTGGAGCTGCTGCCGGGCGCCCGCGCGGAAACGATCGAACCGGCCACCCTGCTGTTGCACAAGCCGGCC 
GGCTGGCGCCACGACGATTTCGAAGGCCTGCTCGCTGCGGGGCGGCGCTGGAGCGATGACCCCAGTCCCTTG 
CGAGCGCTGAAAAAACACTTCGCCCGCCAGCGTCCCACCCTGGCGCTGGACAGCGAGGCTTCCGGGCTGGTG 
GTGTTCAGCCAGCAGCACGGCGTACTGCGCAAGCTGGTGGACGACGGTGCACGGCTGGAGCAGGAATACCTG 
GTCGAGGTCGCCGGCGACCTGGCCGCCGGCGGCCTCGAGCGCCTGCGCCACGGCCTCGCCTACCAGGGCCGC 
AGGCTATCGCCGTGCAAGGTCAGTTGGCAGAACGAAAGCCACCTGCGCTTCGCCCTCAAAGACGTGCTGCCC 
GGCCAGTTGCGCTTCATGTGCGAAAGCGAGGGGCTGGAAGTGCGGAGCATCCGCCGCCTGCGCATCGGCGCG 
CTGCCGCTGGCCAGGCTACCGCTCGGCGAATGGCGCTACCTCGGCCTCCACGAACGCTTCTGA