ViewGene

Locus Name:
GeneID:
Location:

GeneID:338
TrivialName: PA14_71280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71280
PAO1 Ortholog Locus:PA5399
Sequence Length:1962
Protein Length:653
Start: 6350959
Stop: 6352920
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08784.1|AE004952_6 (AE004952) probable ferredoxin [Pseudomonas aeruginosa PAO1]
Identities = 651/653 (99%), Positives = 653/653 (100%)
Sequence:
ATGCTCGACACCCTCCTCCCCGTCCTGCTCTTCGCCGCCCTGGCACTTGCCGTGCTCGGCGCCGCGAAGCGC
TTCCTCATGTGGCGCCGCGGCCGACCCGCCAAGGTCGACTGGATCGGCGGCCTCATGCAGATGCCGCGTCGC
TACCTGGTGGACCTGCACCATGTGGTAGAGCGCGACAGGTACATGTCCAGGACCCACGTCGCCACCGCCGGC
GGCTTCGTCCTGGCGGCGCTGCTGGCGATCCTGGTACACGGTTTCGGGCTGCACGGCCGGATCCTCGGCTTC
GCCCTGCTGGCGGCCACGGCGCTGATGTTCGTCGGCGCGCTGTTCGTCGCCCGCCGCCGCCTCGACCCACCG
TCGCGGCTGTCGAAGGGCCCCTGGATGCGCCTGCCGAAGAGCCTGCTGGCGTTCGCCGCGAGCTTCTTCCTC
GCCACCCTGCCGGTGGCCGGGATCCTGCCGGAAGGCTTCGGCGGCTGGTTCCTCGCCGGCCTCCTCGCCATT
GGCGTGGCCTGGGGTGTGTCCGAGCTGTTCCTCGGCATGACCTGGGGCGGGCCGATGAAGCACGCCTTCGCC
GGTGCCCTGCACCTGGCCTGGCACCGCCGCGCCGAACGCTTCGGCGGCGGCCGCTCCACCGGCCTCAAGGCG
CTCGACCTGGCCGATCCGCAGGCGCCGCTGGGCGTGGAAAAGCCCAGCGACTTCACCTGGAACCAGTTGCTC
GGGTTCGACGCCTGCGTGCAGTGCGGCAAGTGCGAGGCGATGTGCCCGGCGTTCGCCGCCGGCCAGCCGCTG
AACCCGAAGAAGCTGATCCAGGACATGGTCATCGGCCTGGCCGGCGGCAACGACGCGAAGTTCGCCGGCAGC
CCCTATCCAGGCAAACCGCTGGGCGAGCACGGCGGCGGCCCGCACCAGCCGATCGTCGCGCTGGATGGCAAG
GCCCTGGTCGACGCCGACACCCTATGGTCCTGCACCACCTGCCGGGCCTGCGTCGAGGAGTGCCCGATGATG
ATCGAGCACGTCGACGCCATCGTCGACATGCGCCGCCACCTGACCCTGGAGAAAGGCGCCACGCCGAACAAG
GGCGCCGAGGTGCTGGACAACCTGATCGCCACCGACAACCCCGGCGGTTTCGCCCCCGGCGGCCGGTTGAAC
TGGGCGGCCGACCTGAACCTGCCGCTGATGAGCGAGAAGAAGAGCGCCGACGTGCTGTTCTGGGTCGGCGAC
GGCGCCTTCGACATGCGCAACCAGCGCACCCTGCGCGCCTTCGTGAAGATCCTCAAGGCAGCCGCGGTGGAC
TTCGCCGTGCTCGGCCTGGAGGAGCGCGACAGCGGCGACGTGGCGCGCCGGCTGGGCGACGAGGCGACCTTC
CAGAACCTGGCCAGGCGCAATATCGCGACCCTGGCGAAATACCGCTTCACCCGCATCGTCAGCTGCGACCCG
CACAGCTTCCATGTGCTGAAGAACGAATACGGCGCCCTCGGCGGCGACTACCAGGTACTGCACCACAGCACC
TTCATTGACGAACTGCTGCGCGCCGGCACGCTGCAACCGGGCCGCAGCAAGGCCGGCAGCGTCACCTACCAC
GACCCCTGCTACCTGGGCCGCTACAACGGCGAGTACGAGGCGCCGCGCAACGTGCTGCGCGCACTCGGCATC
GAGGTCAAGGAAATGCAACGCTCCGGCTTCCGCTCGCGCTGTTGCGGCGGCGGTGGCGGCGCGCCGATCACC
GACATCCCCGGCAAGCAACGGATTCCCGACATGCGCATGGCCGACATCCGCGAGACCGGCGCCGAGCTGGTG
GCCGTCGGCTGCCCGCAGTGCACCGCGATGCTCGAAGGCGTGGTGGCACCGCGGCCGGAGATCAAGGACATC
GCCGAGCTGGTGGCGGAAGCGCTGATAGAGCAGGCGGAAGCGCCGGCAAAAAAGCCGGTGCGGCGTGAAGCC
GTGGCGGAGGTGCATTGA
Translation:
MLDTLLPVLLFAALALAVLGAAKRFLMWRRGRPAKVDWIGGLMQMPRRYLVDLHHVVERDRYMSRTHVATAG
GFVLAALLAILVHGFGLHGRILGFALLAATALMFVGALFVARRRLDPPSRLSKGPWMRLPKSLLAFAASFFL
ATLPVAGILPEGFGGWFLAGLLAIGVAWGVSELFLGMTWGGPMKHAFAGALHLAWHRRAERFGGGRSTGLKA
LDLADPQAPLGVEKPSDFTWNQLLGFDACVQCGKCEAMCPAFAAGQPLNPKKLIQDMVIGLAGGNDAKFAGS
PYPGKPLGEHGGGPHQPIVALDGKALVDADTLWSCTTCRACVEECPMMIEHVDAIVDMRRHLTLEKGATPNK
GAEVLDNLIATDNPGGFAPGGRLNWAADLNLPLMSEKKSADVLFWVGDGAFDMRNQRTLRAFVKILKAAAVD
FAVLGLEERDSGDVARRLGDEATFQNLARRNIATLAKYRFTRIVSCDPHSFHVLKNEYGALGGDYQVLHHST
FIDELLRAGTLQPGRSKAGSVTYHDPCYLGRYNGEYEAPRNVLRALGIEVKEMQRSGFRSRCCGGGGGAPIT
DIPGKQRIPDMRMADIRETGAELVAVGCPQCTAMLEGVVAPRPEIKDIAELVAEALIEQAEAPAKKPVRREA
VAEVH*
AnnotationID:348GeneID:338
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 09:09:29
Gene Name:
Confidence Code:3
GeneProduct:putative ferredoxin
Cell Localization:()
Synonyms:PA5399
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative iron-sulfur cluster-binding protein
Functional Category Confidence Code:5
COGs:COG0247
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN65942.1|AE016222_4 (AE016775) iron-sulfur cluster-binding protein [Pseudomonas putida
           KT2440]
          Length = 650

 Score = 1123 bits (2905), Expect = 0.0
 Identities = 544/654 (83%), Positives = 587/654 (89%), Gaps = 5/654 (0%)

>gb|AAO53941.1| (AE016857) iron-sulfur cluster-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 669

 Score = 1098 bits (2840), Expect = 0.0
 Identities = 534/658 (81%), Positives = 582/658 (88%), Gaps = 10/658 (1%)

Structural Features:
COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]
CD-Length = 388 residues,  99.2% aligned
Score =  238 bits (607), Expect = 2e-63
Identities = 118/418 (28%), Positives = 169/418 (40%), Gaps = 53/418 (12%)
Genomic Context:
Comment:
ReferenceID:679
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17821
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34699
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:338_cdd.html
URL:
Homologs By Global Alignment
Gene ID:338

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
558 PA5399_tr translation of PA5399 653 99.69 99.99 0 3430.0
27193 gb|AAG08784.1|AE004952_6 (AE004952) probable ferredoxin [Pseudomonas aeruginosa PAO1] 653 99.69 99.99 0 3430.0
27194 gb|AAN65942.1|AE016222_4 (AE016775) iron-sulfur cluster-binding protein [Pseudomonas putida KT2440] 655 83.35 89.92 7 2913.0
27195 gb|AAO53941.1| (AE016857) iron-sulfur cluster-binding protein [Pseudomonas syringae pv. tomato str. DC3000] 674 79.22 86.35 26 2849.0
27196 emb|CAD17210.1| (AL646076) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum] 673 52.45 64.48 52 1743.0
GC ORFID: 43340How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5399Glimmer Score:
Start: 5614648Stop: 5616609
Length: 1962
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5399 translation of PA5399Homolog Bit Score 1325.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6582 (ORF: BLASTX 1113.0), t_PA5399 (ORF: GLIMMER)
GC ORF Sequence
ATGCTCGACACCCTCCTCCCCGTCCTGCTCTTCGCCGCCCTGGCACTTGCCGTGCTCGGCGCCGCGAAGCGC
TTCCTCATGTGGCGCCGCGGCCGACCCGCCAAGGTCGACTGGATCGGCGGCCTCATGCAGATGCCGCGTCGC
TACCTGGTGGACCTGCACCATGTGGTAGAGCGCGACAGGTACATGTCCAGGACCCACGTCGCCACCGCCGGC
GGCTTCGTCCTGGCGGCGCTGCTGGCGATCCTGGTACACGGTTTCGGGCTGCACGGCCGGATCCTCGGCTTC
GCCCTGCTGGCGGCCACGGCGCTGATGTTCGTCGGCGCGCTGTTCGTCGCCCGCCGCCGCCTCGACCCACCG
TCGCGGCTGTCGAAGGGCCCCTGGATGCGCCTGCCGAAGAGCCTGCTGGCGTTCGCCGCGAGCTTCTTCCTC
GCCACCCTGCCGGTGGCCGGGATCCTGCCGGAAGGCTTCGGCGGCTGGTTCCTCGCCGGCCTCCTCGCCATT
GGCGTGGCCTGGGGTGTGTCCGAGCTGTTCCTCGGCATGACCTGGGGCGGGCCGATGAAGCACGCCTTCGCC
GGTGCCCTGCACCTGGCCTGGCACCGCCGCGCCGAACGCTTCGGCGGCGGCCGCTCCACCGGCCTCAAGGCG
CTCGACCTGGCCGATCCGCAGGCGCCGCTGGGCGTGGAAAAGCCCAGCGACTTCACCTGGAACCAGTTGCTC
GGGTTCGACGCCTGCGTGCAGTGCGGCAAGTGCGAGGCGATGTGCCCGGCGTTCGCCGCCGGCCAGCCGCTG
AACCCGAAGAAGCTGATCCAGGACATGGTCATCGGCCTGGCCGGCGGCAACGACGCGAAGTTCGCCGGCAGC
CCCTATCCAGGCAAACCGCTGGGCGAGCACGGCGGCGGCCCGCACCAGCCGATCGTCGCGCTGGATGGCAAG
GCCCTGGTCGACGCCGACACCCTATGGTCCTGCACCACCTGCCGGGCCTGCGTCGAGGAGTGCCCGATGATG
ATCGAGCACGTCGACGCCATCGTCGACATGCGCCGCCACCTGACCCTGGAGAAAGGCGCCACGCCGAACAAG
GGCGCCGAGGTGCTGGACAACCTGATCGCCACCGACAACCCCGGCGGTTTCGCCCCCGGCGGCCGGTTGAAC
TGGGCGGCCGACCTGAACCTGCCGCTGATGAGCGAGAAGAAGAGCGCCGACGTGCTGTTCTGGGTCGGCGAC
GGCGCCTTCGACATGCGCAACCAGCGCACCCTGCGCGCCTTCGTGAAGATCCTCAAGGCAGCCGCGGTGGAC
TTCGCCGTGCTCGGCCTGGAGGAGCGCGACAGCGGCGACGTGGCGCGCCGGCTGGGCGACGAGGCGACCTTC
CAGAACCTGGCCAGGCGCAATATCGCGACCCTGGCGAAATACCGCTTCACCCGCATCGTCAGCTGCGACCCG
CACAGCTTCCATGTGCTGAAGAACGAATACGGCGCCCTCGGCGGCGACTACCAGGTACTGCACCACAGCACC
TTCATTGACGAACTGCTGCGCGCCGGCACGCTGCAACCGGGCCGCAGCAAGGCCGGCAGCGTCACCTACCAC
GACCCCTGCTACCTGGGCCGCTACAACGGCGAGTACGAGGCGCCGCGCAACGTGCTGCGCGCACTCGGCATC
GAGGTCAAGGAAATGCAACGCTCCGGCTTCCGCTCGCGCTGTTGCGGCGGCGGTGGCGGCGCGCCGATCACC
GACATCCCCGGCAAGCAACGGATTCCCGACATGCGCATGGCCGACATCCGCGAGACCGGCGCCGAGCTGGTG
GCCGTCGGCTGCCCGCAGTGCACCGCGATGCTCGAAGGCGTGGTGGCACCGCGGCCGGAGATCAAGGACATC
GCCGAGCTGGTGGCGGAAGCGCTGATAGAGCAGGCGGAAGCGCCGGCAAAAAAGCCGGTGCGGCGTGAAGCC
GTGGCGGAGGTGCATTGA