ViewGene

Locus Name:
GeneID:
Location:

GeneID:3379
TrivialName: PA14_60110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60110
PAO1 Ortholog Locus:
Sequence Length:711
Protein Length:236
Start: 5354756
Stop: 5354046
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84132.1| (AY273869) hypothetical protein RL005 [Pseudomonas aeruginosa]
Identities = 236/236 (100%), Positives = 236/236 (100%)
Sequence:
ATGAGTGTGTTACAGATCAAAGGGCGTACAACGAAATCCCACACGGATTTTGACGCGGCATCGTACTCCAGC
AACAGCCTTATACTCACTGATGCAGGGGACGAGAGAATTGAAGAGTTTTCCCTCGAATTGTCCGTGGGTGAA
GGGTGGAGTGATAACTATTCTGGCAACGACAAAAACCTGTGGCGCATTGTCGATGGTATGACGATCAGGGGT
CACGATTCTGTTGTGGTGGAGGCCGCTGAAGAAATCAAGGTGCCGCACAATCGGTACGGCATAGTCCTACCT
ACGGGAAGTCTTTTTCTCTCACGCGGCGTGCTGGTTGCTTCGGCGAAGGTCGAACCTGCATTTGATGGCAAG
CTCAAGCTCAGGATATTCAACACCACCAACAAAAATGTCTGCCTTACCAAAGGCGAGAAGCTTGGCTCTGTG
ATTTTTTTCTCCACAGAATCGACGCACACCCAAAGCCCCATCAAGCGTGGCAGTGAAATATCGACGCTTCCC
ATCACGCGGCGCGCGCGATTGAAGAAGTGGTTTTCGCTCAATCCCACCATATGGGTCGGGTGGACGCTGAAT
TTAATCGGAAGTTCCCTGGTGTCTTCTCTTATAATGTACGCCGTCTATTACAAGGTTGTGCTGGAACACCAG
TCGCAGCCTCCTCAGTCACAACAAAACGCTCAGCCATCGCCGAACGAAGTTAAGCCAAAATGA
Translation:
MSVLQIKGRTTKSHTDFDAASYSSNSLILTDAGDERIEEFSLELSVGEGWSDNYSGNDKNLWRIVDGMTIRG
HDSVVVEAAEEIKVPHNRYGIVLPTGSLFLSRGVLVASAKVEPAFDGKLKLRIFNTTNKNVCLTKGEKLGSV
IFFSTESTHTQSPIKRGSEISTLPITRRARLKKWFSLNPTIWVGWTLNLIGSSLVSSLIMYAVYYKVVLEHQ
SQPPQSQQNAQPSPNEVKPK*
AnnotationID:3387GeneID:3379
AnnotatorUID: diggins
Modification Date/Time: 2006-02-02 07:07:57
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:6761
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17061
Author/Investigator(s):
Title: CDD research
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:NCBI CD-3379.htm
URL:
ReferenceID:23903
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3379

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
151240 gb|AAP84132.1| (AY273869) hypothetical protein RL005 [Pseudomonas aeruginosa] 236 99.99 99.99 0 1213.0
GC ORFID: 46381How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL005Glimmer Score:
Start: 4618435Stop: 4617725
Length: 711
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RL005 236 Homolog: No significant similarity () translation of RL005Homolog Bit Score 471.0
Other Homologs: t_RL005 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTGTGTTACAGATCAAAGGGCGTACAACGAAATCCCACACGGATTTTGACGCGGCATCGTACTCCAGC
AACAGCCTTATACTCACTGATGCAGGGGACGAGAGAATTGAAGAGTTTTCCCTCGAATTGTCCGTGGGTGAA
GGGTGGAGTGATAACTATTCTGGCAACGACAAAAACCTGTGGCGCATTGTCGATGGTATGACGATCAGGGGT
CACGATTCTGTTGTGGTGGAGGCCGCTGAAGAAATCAAGGTGCCGCACAATCGGTACGGCATAGTCCTACCT
ACGGGAAGTCTTTTTCTCTCACGCGGCGTGCTGGTTGCTTCGGCGAAGGTCGAACCTGCATTTGATGGCAAG
CTCAAGCTCAGGATATTCAACACCACCAACAAAAATGTCTGCCTTACCAAAGGCGAGAAGCTTGGCTCTGTG
ATTTTTTTCTCCACAGAATCGACGCACACCCAAAGCCCCATCAAGCGTGGCAGTGAAATATCGACGCTTCCC
ATCACGCGGCGCGCGCGATTGAAGAAGTGGTTTTCGCTCAATCCCACCATATGGGTCGGGTGGACGCTGAAT
TTAATCGGAAGTTCCCTGGTGTCTTCTCTTATAATGTACGCCGTCTATTACAAGGTTGTGCTGGAACACCAG
TCGCAGCCTCCTCAGTCACAACAAAACGCTCAGCCATCGCCGAACGAAGTTAAGCCAAAATGA