ViewGene
Locus Name:
GeneID:
Location:

GeneID:3377
TrivialName: PA14_00890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00890
PAO1 Ortholog Locus:PA0075
Sequence Length:729
Protein Length:242
Start: 88479
Stop: 87751
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03465.1|AE004446_13 (AE004446) probable phosphoprotein phosphatase [Pseudomonas aeruginosa PAO1]
Identities = 241/242 (99%), Positives = 242/242 (100%)
Sequence:
ATGGTGCCCAACTCAGTCAGCTACTACAGGTCGGCCAGCTACAGCCACGTCGGCATGGTCCGCAAGGTCAAC
GAAGACGCCAGTCTCGACGCCCCAGAGTCGGGACTCTGGGTGGTCGCCGACGGCATGGGCGGCCACGCCGCC
GGCGACTTCGTCAGCAGCCTGATCGTCGATACCCTGCGGCGCATCCCGGCGGCCTCCTCGCTACCGGCCTAC
GTCGGCGCGTTGCGCACCGGCCTCGCCCAGGTCAACGAGCGGGTTCGCCAGGAGGCCGGCCTGCGTGGCGTC
AGCGTGATGGGCAGCACCCTGGTACTGCTCGCCGCGCGCGGCAACCAGGCGAGCTGCCTGTGGGCCGGCGAC
AGCCGCCTGTACCGCCTGCGCGGCGGCGTGCTGGAAGCCATCTCGCGGGACCACAGCTACGTCCAGGAGCTG
CTCGACAACGCATTGATCAGCGAGGAAGAGGCGCGCCACCATCCGCGCGCCAACGTGGTCACCCGCGCGGTC
GGCGTGCACGAGCAACTGGAACTGTCGGAAGCCGCGCTGCACGTGCTGCCCGGCGACAGCTTCCTGCTCTGC
AGCGACGGCCTCAACAAGACCGCCGACGACAGCGAACTGCGCGACGTGCTCAGCCACAGCGATCCCTATGCG
GTGGTCCGCAGCCTGGTCCACCTGGGCCTGACCCGCGGCGCCCCGGACAACATCACGGCCCTGGTGGTCAGG
GCCTTCTGA
Translation:
MVPNSVSYYRSASYSHVGMVRKVNEDASLDAPESGLWVVADGMGGHAAGDFVSSLIVDTLRRIPAASSLPAY
VGALRTGLAQVNERVRQEAGLRGVSVMGSTLVLLAARGNQASCLWAGDSRLYRLRGGVLEAISRDHSYVQEL
LDNALISEEEARHHPRANVVTRAVGVHEQLELSEAALHVLPGDSFLLCSDGLNKTADDSELRDVLSHSDPYA
VVRSLVHLGLTRGAPDNITALVVRAF*
AnnotationID:3385GeneID:3377
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 17:05:49
Gene Name:
Confidence Code:3
GeneProduct:putative serine/threonine phosphoprotein phosphatase
Cell Localization:()
Synonyms:PA0075
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0631,cd00143
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0631, PTC1, Serine/threonine protein phosphatase 
[Signal transduction mechanisms]
CD-Length = 262 residues,  95.4% aligned
Score =  211 bits (537), Expect = 9e-56
Identities = 104/250 (41%), Positives = 133/250 (53%), Gaps = 11/250 (4%)

cd00143, PP2Cc, Serine/threonine phosphatases, 
family 2C, catalytic domain
CD-Length = 254 residues,  99.6% aligned
Score =  147 bits (373), Expect = 8e-37
Identities = 79/253 (31%), Positives = 108/253 (42%), Gaps = 22/253 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6757




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23899




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33430




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type: (text/plain)







    
Data:3377_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3377
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5408
                           PA0075_tr
                           translation of PA0075
                           242
                           99.58
                           99.99
                           0
                           1213.0
     

     
     
151232
                           gb|AAG03465.1|AE004446_13
                           (AE004446) probable phosphoprotein phosphatase [Pseudomonas aeruginosa PAO1]
                           242
                           99.58
                           99.99
                           0
                           1213.0
     

     
     
151233
                           gb|AAO58839.1|
                           (AE016875) serine/threonine phosphoprotein phosphatase [Pseudomonas syringae pv. tomato str. DC3000]
                           247
                           45.74
                           58.70
                           10
                           498.0
     

     
     
5409
                           PA1670_tr
                           translation of PA1670
                           245
                           44.08
                           57.55
                           6
                           486.0
     

     
     
151234
                           gb|AAG05059.1|AE004594_11
                           (AE004594) serine/threonine phosphoprotein phosphatase Stp1 [Pseudomonas aeruginosa PAO1]
                           245
                           44.08
                           57.55
                           6
                           486.0
     

     






      

          
GC ORFID: 46379How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0075Glimmer Score: 

          
Start: 5889817Stop: 5889089

          
Length: 729


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0075 translation of PA0075Homolog Bit Score 471.0

          
Other Homologs:  t_PA1670 (ORF: BLASTX 193.0), t_PA0075 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTGCCCAACTCAGTCAGCTACTACAGGTCGGCCAGCTACAGCCACGTCGGCATGGTCCGCAAGGTCAAC 
GAAGACGCCAGTCTCGACGCCCCAGAGTCGGGACTCTGGGTGGTCGCCGACGGCATGGGCGGCCACGCCGCC 
GGCGACTTCGTCAGCAGCCTGATCGTCGATACCCTGCGGCGCATCCCGGCGGCCTCCTCGCTACCGGCCTAC 
GTCGGCGCGTTGCGCACCGGCCTCGCCCAGGTCAACGAGCGGGTTCGCCAGGAGGCCGGCCTGCGTGGCGTC 
AGCGTGATGGGCAGCACCCTGGTACTGCTCGCCGCGCGCGGCAACCAGGCGAGCTGCCTGTGGGCCGGCGAC 
AGCCGCCTGTACCGCCTGCGCGGCGGCGTGCTGGAAGCCATCTCGCGGGACCACAGCTACGTCCAGGAGCTG 
CTCGACAACGCATTGATCAGCGAGGAAGAGGCGCGCCACCATCCGCGCGCCAACGTGGTCACCCGCGCGGTC 
GGCGTGCACGAGCAACTGGAACTGTCGGAAGCCGCGCTGCACGTGCTGCCCGGCGACAGCTTCCTGCTCTGC 
AGCGACGGCCTCAACAAGACCGCCGACGACAGCGAACTGCGCGACGTGCTCAGCCACAGCGATCCCTATGCG 
GTGGTCCGCAGCCTGGTCCACCTGGGCCTGACCCGCGGCGCCCCGGACAACATCACGGCCCTGGTGGTCAGG 
GCCTTCTGA