ViewGene
Locus Name:
GeneID:
Location:

GeneID:3376
TrivialName: PA14_14200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14200
PAO1 Ortholog Locus:PA3851
Sequence Length:753
Protein Length:250
Start: 1212920
Stop: 1213672
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07238.1|AE004802_7 (AE004802) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 245/250 (98%), Positives = 246/250 (98%)
Sequence:
ATGCCGGCGGAGACCCCGTCGCCGCGCCCGGACGCCGATCCGCCGCAGTGCGCGTTGCCCGAGGCGAGGCCG
GACCGCGACGCTGGCACCAAGCTGCGCGCCGCGGTGCTCGGCGCCAACGATGGCCTGGTGTCGAACCTGTGC
CTGGTGATGGGCGTGGCGGGTGCGAGCATGGCGCATTCGTCCATCGTCCTCACCGGGATGGCCGGACTGGTG
TCCGGGGCCTGCTCGATGGCCCTCGGCGAGTGGCTGTCGGTGACCAACGCCCGCGAGATGGCGAGCAAGCGC
ATCGCCGAGGAAGAACGCCTGCTCAGGCTCTGCCCGGACACCGAGACCCAGGAACTGATCGATATCTTCACC
GCCAAGGGGCTGAGCGAGGTATCCGCCCGGCGCGTGGCCCTGCAACTGATGAACGACGGTCGTGGCGCGCTG
GACACCTTGTCCCGCGAGGCCCTCGGCATCGATCCGACGGAGCTGGGCGGCAACCCGTGGAACGCGGCGGGC
ACGTCGTTCCTGCTGTTTTCCCTTGGCGCCCTGGTGCCGGTGGCGCCGTTCCTGTTCCTCGACGGCGCCGCG
GCGCTGGTCGCAAGCCTGCTGTTCAGCCTGCTTGCGCTGCTGTTCAGCGGCGCGGTCACCGCCCGTTTCACC
GGGCGGCCGCTGGCGTTCTCGGCGTTGCGCCAGGTGCTGGTCGGTACCCTTGCCGCGGCCTTCACCTATGGG
TTGGGTACCGCGCTCGGCGTGGGCCTGGGCTGA
Translation:
MPAETPSPRPDADPPQCALPEARPDRDAGTKLRAAVLGANDGLVSNLCLVMGVAGASMAHSSIVLTGMAGLV
SGACSMALGEWLSVTNAREMASKRIAEEERLLRLCPDTETQELIDIFTAKGLSEVSARRVALQLMNDGRGAL
DTLSREALGIDPTELGGNPWNAAGTSFLLFSLGALVPVAPFLFLDGAAALVASLLFSLLALLFSGAVTARFT
GRPLAFSALRQVLVGTLAAAFTYGLGTALGVGLG*
AnnotationID:3384GeneID:3376
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 23:11:12
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA3851
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1814
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC73899.1| (AP005045) putative membrane protein [Streptomyces avermitilis
           MA-4680]
          Length = 243

 Score =  176 bits (446), Expect = 1e-43
 Identities = 113/240 (47%), Positives = 146/240 (60%), Gaps = 8/240 (3%)

>dbj|BAC74156.1| (AP005046) putative membrane protein [Streptomyces avermitilis
           MA-4680]
          Length = 236

 Score =  151 bits (382), Expect = 3e-36
 Identities = 95/215 (44%), Positives = 129/215 (60%), Gaps = 3/215 (1%)








 
Structural Features:
COG1814, Uncharacterized membrane protein 
CD-Length = 229 residues, 100.0% aligned
Score =  137 bits (346), Expect = 2e-33
Identities = 92/232 (39%), Positives = 128/232 (55%), Gaps = 6/232 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6755




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23897




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31711




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3376_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3376
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5407
                           PA3851_tr
                           translation of PA3851
                           250
                           98.00
                           98.40
                           0
                           1211.0
     

     
     
151224
                           gb|AAG07238.1|AE004802_7
                           (AE004802) hypothetical protein PA3851 [Pseudomonas aeruginosa PAO1]
                           250
                           98.00
                           98.40
                           0
                           1211.0
     

     
     
151225
                           dbj|BAC73899.1|
                           (AP005045) putative membrane protein [Streptomyces avermitilis MA-4680]
                           256
                           44.92
                           57.81
                           19
                           446.0
     

     
     
151226
                           emb|CAB52862.1|
                           (AL939111) putative membrane protein [Streptomyces coelicolor A3(2)]
                           256
                           43.75
                           57.42
                           19
                           433.0
     

     
     
151227
                           gb|AAD49328.1|AF162938_1
                           (AF162938) H3U [Streptomyces coelicolor A3(2)]
                           255
                           43.13
                           56.86
                           21
                           441.0
     

     






      

          
GC ORFID: 46378How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3851Glimmer Score: 

          
Start: 3741018Stop: 3740266

          
Length: 753


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3851 translation of PA3851Homolog Bit Score 471.0

          
Other Homologs:  t_PA3851 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGCGGAGACCCCGTCGCCGCGCCCGGACGCCGATCCGCCGCAGTGCGCGTTGCCCGAGGCGAGGCCG 
GACCGCGACGCTGGCACCAAGCTGCGCGCCGCGGTGCTCGGCGCCAACGATGGCCTGGTGTCGAACCTGTGC 
CTGGTGATGGGCGTGGCGGGTGCGAGCATGGCGCATTCGTCCATCGTCCTCACCGGGATGGCCGGACTGGTG 
TCCGGGGCCTGCTCGATGGCCCTCGGCGAGTGGCTGTCGGTGACCAACGCCCGCGAGATGGCGAGCAAGCGC 
ATCGCCGAGGAAGAACGCCTGCTCAGGCTCTGCCCGGACACCGAGACCCAGGAACTGATCGATATCTTCACC 
GCCAAGGGGCTGAGCGAGGTATCCGCCCGGCGCGTGGCCCTGCAACTGATGAACGACGGTCGTGGCGCGCTG 
GACACCTTGTCCCGCGAGGCCCTCGGCATCGATCCGACGGAGCTGGGCGGCAACCCGTGGAACGCGGCGGGC 
ACGTCGTTCCTGCTGTTTTCCCTTGGCGCCCTGGTGCCGGTGGCGCCGTTCCTGTTCCTCGACGGCGCCGCG 
GCGCTGGTCGCAAGCCTGCTGTTCAGCCTGCTTGCGCTGCTGTTCAGCGGCGCGGTCACCGCCCGTTTCACC 
GGGCGGCCGCTGGCGTTCTCGGCGTTGCGCCAGGTGCTGGTCGGTACCCTTGCCGCGGCCTTCACCTATGGG 
TTGGGTACCGCGCTCGGCGTGGGCCTGGGCTGA