ViewGene

Locus Name:
GeneID:
Location:

GeneID:3375
TrivialName: PA14_14160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14160
PAO1 Ortholog Locus:PA3853
Sequence Length:690
Protein Length:229
Start: 1211171
Stop: 1211860
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07240.1|AE004802_9 (AE004802) probable transferase [Pseudomonas aeruginosa PAO1]
Identities = 227/229 (99%), Positives = 228/229 (99%)
Sequence:
GTGGGTTACCTGAAGAATCATTGGTGGAAACGCTGGATCCGCCGCCGCGGCTGCAAGCTGGCCGGCGGCCCG
GCCAGTGTCGGCAAGCGCACCACGCTGGTGCTCGAGGAGCAGGTCGAACTCGGCCACCTGCGCATCGTCCCG
CCGAGGCTGGAGATCGGCGCCTACAGCTATGTGCGCAGCGGCACCGACCTGTCCCTGGTGGCGTCCATCGGG
CGTTTCTGCTCGATCGGCTCGGACTGCTTCATCGGCCAGGAAAAACACACCCATCCCAGCGACTGGGTGAGC
AGCCACCCCTTCCAGCACACCGGCACCGCGCTGCGCTACGAGCCGGCGCTGAGCTACGCGGAAATCGGCCAC
GACGTCTGGATCGGACACAGCGCGATGGTGATGGAAGGGGTCAAGGTCGGGACCGGGGCGATCATCGCCACG
CGCGCCGTGGTCACTCGCGACGTGCCGCCCTACGCCATCGTCGCCGGCACCCCGGCGCAGGTGATCCGCTAC
CGGCATCCGCCGGAGATCATCGAGGGTCTGCTCGCCTCGCGCTGGTGGGAGCTGGATAGCGCCTTCCTCACC
GGCCTGCCGCTGGACCGTCCCCGGGAGTTCCTCGCCGCCCTGGAGACGCGCGAGGCGCCGCGTGCGGCGTAC
CGGCGGATGACCATCACCCGCCAGGGGTGCCGGCTGGATTGA
Translation:
MGYLKNHWWKRWIRRRGCKLAGGPASVGKRTTLVLEEQVELGHLRIVPPRLEIGAYSYVRSGTDLSLVASIG
RFCSIGSDCFIGQEKHTHPSDWVSSHPFQHTGTALRYEPALSYAEIGHDVWIGHSAMVMEGVKVGTGAIIAT
RAVVTRDVPPYAIVAGTPAQVIRYRHPPEIIEGLLASRWWELDSAFLTGLPLDRPREFLAALETREAPRAAY
RRMTITRQGCRLD*
AnnotationID:3383GeneID:3375
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 23:11:33
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA3853
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0110
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0110, WbbJ, Acetyltransferase (isoleucine patch superfamily) 
CD-Length = 190 residues,  94.7% aligned
Score =  106 bits (264), Expect = 6e-24
Identities = 56/188 (29%), Positives = 76/188 (40%), Gaps = 18/188 (9%)
Genomic Context:
Comment:
ReferenceID:14809
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23895
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31709
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3375_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3375

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5405 PA3853_tr translation of PA3853 229 99.12 99.56 0 1213.0
151188 gb|AAG07240.1|AE004802_9 (AE004802) probable transferase [Pseudomonas aeruginosa PAO1] 229 98.68 99.56 0 1210.0
5406 PA0706_tr translation of PA0706 263 33.07 39.16 85 272.0
151201 gb|AAD02068.1| (AF036933) chloramphenicol acetyltransferase; CATB7 [Pseudomonas aeruginosa] 263 33.07 39.16 85 272.0
151200 gb|AAG04095.1|AE004506_5 (AE004506) chloramphenicol acetyltransferase [Pseudomonas aeruginosa PAO1] 263 33.07 39.16 85 272.0
GC ORFID: 46377How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3853Glimmer Score:
Start: 3742767Stop: 3742078
Length: 690
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3853 translation of PA3853Homolog Bit Score 471.0
Other Homologs: t_PA0706 (ORF: BLASTX 104.0), t_PA3853 (ORF: GLIMMER)
GC ORF Sequence
GTGGGTTACCTGAAGAATCATTGGTGGAAACGCTGGATCCGCCGCCGCGGCTGCAAGCTGGCCGGCGGCCCG
GCCAGTGTCGGCAAGCGCACCACGCTGGTGCTCGAGGAGCAGGTCGAACTCGGCCACCTGCGCATCGTCCCG
CCGAGGCTGGAGATCGGCGCCTACAGCTATGTGCGCAGCGGCACCGACCTGTCCCTGGTGGCGTCCATCGGG
CGTTTCTGCTCGATCGGCTCGGACTGCTTCATCGGCCAGGAAAAACACACCCATCCCAGCGACTGGGTGAGC
AGCCACCCCTTCCAGCACACCGGCACCGCGCTGCGCTACGAGCCGGCGCTGAGCTACGCGGAAATCGGCCAC
GACGTCTGGATCGGACACAGCGCGATGGTGATGGAAGGGGTCAAGGTCGGGACCGGGGCGATCATCGCCACG
CGCGCCGTGGTCACTCGCGACGTGCCGCCCTACGCCATCGTCGCCGGCACCCCGGCGCAGGTGATCCGCTAC
CGGCATCCGCCGGAGATCATCGAGGGTCTGCTCGCCTCGCGCTGGTGGGAGCTGGATAGCGCCTTCCTCACC
GGCCTGCCGCTGGACCGTCCCCGGGAGTTCCTCGCCGCCCTGGAGACGCGCGAGGCGCCGCGTGCGGCGTAC
CGGCGGATGACCATCACCCGCCAGGGGTGCCGGCTGGATTGA