ViewGene

Locus Name:
GeneID:
Location:

GeneID:3374
TrivialName: PA14_30270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30270
PAO1 Ortholog Locus:PA2617
Sequence Length:681
Protein Length:226
Start: 2621455
Stop: 2620775
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06005.1|AE004690_5 (AE004690) leucyl/phenylalanyl-tRNA-protein transferase [Pseudomonas aeruginosa PAO1]
Identities = 224/226 (99%), Positives = 225/226 (99%)
Sequence:
ATGCTGACCTGGCTTTCCCGCACCGACTTCGACTTTCCGCCCCTCGACAAGGCCCTGCAGGAGCCCAACGGG
CTGCTCGCGGCCGGAGGCGACCTCAATCCGCAACGCCTGGTCGCAGCCTATCGCCACGGCTGCTTCCCCTGG
TACCAGGATGGCCAGCCAATCCTCTGGTGGTCGCCCGACCCGCGCACCGTCCTGTTCCCCGACGAACTGCAC
GTTTCCCGCAGCCTGGCCAAGTGCCTGCGCCAGCAACGCTTCGAAGTCACTTTCAACCATGACTTCCGGGCG
GTGATCCAGGCTTGTGCCGCGCCGCGCGACTACGCCGACGGCACCTGGATCACCACGCCGATGCAACTGGCC
TACCAGGAGCTGCACCTGCGCGGAATTGCCCACTCCGTGGAAGTCTGGCAGGAGCGACAACTGGTCGGCGGC
CTCTACGGCCTGGCCATGGGCAGGCTGTTCTTCGGCGAATCGATGTTCAGCCGCGCCGACAACGCTTCCAAG
GTCGGCTTCGTCACGCTGGTCCGCCATCTGCGCGACGCCGGCTTCGTCCTCATCGACTGCCAGATGCCGACC
CGCCACCTGCACAGCCTGGGCGCCCGCGCCATCAGCCGGGGGGAATTCGCCGACTACCTGCAACGCTATCGC
GACCAGCCTCCTACCGGCGACCTGGATTTTTAG
Translation:
MLTWLSRTDFDFPPLDKALQEPNGLLAAGGDLNPQRLVAAYRHGCFPWYQDGQPILWWSPDPRTVLFPDELH
VSRSLAKCLRQQRFEVTFNHDFRAVIQACAAPRDYADGTWITTPMQLAYQELHLRGIAHSVEVWQERQLVGG
LYGLAMGRLFFGESMFSRADNASKVGFVTLVRHLRDAGFVLIDCQMPTRHLHSLGARAISRGEFADYLQRYR
DQPPTGDLDF*
AnnotationID:3382GeneID:3374
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 11:11:10
Gene Name:aat
Confidence Code:2
GeneProduct:leucyl/phenylalanyl-tRNA-protein transferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2360,pfam03588
Secondary Functional Category(ies):
EC Number:2.3.2.6
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69599.1|AE016593_7 (AE016788) leucyl/phenylalanyl-tRNA--protein transferase
           [Pseudomonas putida KT2440]
          Length = 226

 Score =  370 bits (951), Expect = e-102
 Identities = 177/219 (80%), Positives = 193/219 (88%)

>gb|AAO56828.1| (AE016868) leucyl/phenylalanyl-tRNA--protein transferase
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 229

 Score =  352 bits (903), Expect = 1e-96
 Identities = 166/223 (74%), Positives = 187/223 (83%)

>emb|CAD86131.1| (BX321863) Leucyl/phenylalanyl-tRNA--protein transferase
           [Nitrosomonas europaea ATCC 19718]
          Length = 236

 Score =  251 bits (641), Expect = 2e-66
 Identities = 122/212 (57%), Positives = 152/212 (71%)
Structural Features:
COG2360, Aat, Leu/Phe-tRNA-protein transferase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 221 residues,  97.7% aligned
Score =  318 bits (817), Expect = 3e-88
Identities = 129/217 (59%), Positives = 151/217 (69%), Gaps = 1/217 (0%)

pfam03588, Leu_Phe_trans, Leucyl/phenylalanyl-tRNA protein transferase.
CD-Length = 173 residues, 100.0% aligned
Score =  266 bits (682), Expect = 1e-72
Identities = 102/173 (58%), Positives = 121/173 (69%)
Genomic Context:
Comment:
ReferenceID:6751
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23893
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33181
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3374_cdd.html
URL:
ReferenceID:34553
Author/Investigator(s): Shrader TE, Tobias JW, Varshavsky A.
Title: The N-end rule in Escherichia coli: cloning and analysis of the leucyl, phenylalanyl-tRNA-protein transferase gene aat.
PubMed: 8331068
MedLine:
Source:
J Bacteriol. 1993 Jul;175(14):4364-74.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8331068
Homologs By Global Alignment
Gene ID:3374

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5404 PA2617_tr translation of PA2617 226 99.11 99.55 0 1212.0
151140 gb|AAG06005.1|AE004690_5 (AE004690) leucyl/phenylalanyl-tRNA-protein transferase [Pseudomonas aeruginosa PAO1] 226 99.11 99.55 0 1212.0
151141 gb|AAN69599.1|AE016593_7 (AE016788) leucyl/phenylalanyl-tRNA--protein transferase [Pseudomonas putida KT2440] 226 78.31 85.84 0 943.0
151142 gb|AAO56828.1| (AE016868) leucyl/phenylalanyl-tRNA--protein transferase [Pseudomonas syringae pv. tomato str. DC3000] 231 72.29 81.81 7 899.0
151144 gb|AAQ59472.1| (AE016916) leucyltransferase [Chromobacterium violaceum ATCC 12472] 234 52.56 64.95 9 624.0
GC ORFID: 46376How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2617Glimmer Score:
Start: 2332471Stop: 2333151
Length: 681
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2617 translation of PA2617Homolog Bit Score 471.0
Other Homologs: psyr_15may02_Scaffold17_revised_gene2749 (ORF: BLASTX 360.0), t_PA2617 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGACCTGGCTTTCCCGCACCGACTTCGACTTTCCGCCCCTCGACAAGGCCCTGCAGGAGCCCAACGGG
CTGCTCGCGGCCGGAGGCGACCTCAATCCGCAACGCCTGGTCGCAGCCTATCGCCACGGCTGCTTCCCCTGG
TACCAGGATGGCCAGCCAATCCTCTGGTGGTCGCCCGACCCGCGCACCGTCCTGTTCCCCGACGAACTGCAC
GTTTCCCGCAGCCTGGCCAAGTGCCTGCGCCAGCAACGCTTCGAAGTCACTTTCAACCATGACTTCCGGGCG
GTGATCCAGGCTTGTGCCGCGCCGCGCGACTACGCCGACGGCACCTGGATCACCACGCCGATGCAACTGGCC
TACCAGGAGCTGCACCTGCGCGGAATTGCCCACTCCGTGGAAGTCTGGCAGGAGCGACAACTGGTCGGCGGC
CTCTACGGCCTGGCCATGGGCAGGCTGTTCTTCGGCGAATCGATGTTCAGCCGCGCCGACAACGCTTCCAAG
GTCGGCTTCGTCACGCTGGTCCGCCATCTGCGCGACGCCGGCTTCGTCCTCATCGACTGCCAGATGCCGACC
CGCCACCTGCACAGCCTGGGCGCCCGCGCCATCAGCCGGGGGGAATTCGCCGACTACCTGCAACGCTATCGC
GACCAGCCTCCTACCGGCGACCTGGATTTTTAG