ViewGene
Locus Name:
GeneID:
Location:

GeneID:3371
TrivialName: PA14_53500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53500
PAO1 Ortholog Locus:PA0833
Sequence Length:714
Protein Length:237
Start: 4744009
Stop: 4743296
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04222.1|AE004518_3 (AE004518) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 237/237 (100%), Positives = 237/237 (100%)
Sequence:
ATGTTCACCTCCCGTTGCCTGCCTCTGGCCGCAGCCGTCACCGCACTGGCGCTGCTCGCCGGTTGTGCCAAC
AACAACCCCTACGACACGCAAAGCCAAAGCCAGGGTGGCATGAGCAAGACGGCCAAGTACGGCGGACTGGGT
GCGCTGGCCGGCGCCGTCGCCGGCGCCGCGATCGACCACAACAACCGTGGCAAGGGCGCGTTGATCGGCGCT
GCCGTTGCCGGCGCGGCCGCCGCGGGTTATGGCTACTACGCCGACAAGCAGGAAGCCGAGCTGCGTCGGCAG
ATGGAAGGCACCGGCGTGGAAGTGCAGCGCCAGGGCGACGACATCAAGCTGATCATGCCGGGCAACATCACC
TTCGCCACCGATTCGGCGAACATCGCTCCGAGCTTCTACGCGCCGCTGAACAACCTGGCGAACTCGTTCAAG
CAGTACAACCAGAACACCATCGAGATCGTCGGCTACACCGACAGCACCGGCAGCCGCCAGCACAACATGGAC
CTGTCCCAGCGTCGTGCGCAGAGCGTGGCCGGCTACCTGACCGCCCAGGGCGTCGACGGCACCCGCCTGAGT
ACCCGCGGCATGGGCCCGGACCAGCCGATCGCGAGCAACTCCACCGCCGACGGTCGCGCGCAGAACCGGCGC
GTCGAGGTCAACCTGCGACCGGTTCCGGGCGCCCAGGGCCCGGCGCAGACCCAGCCGCAGTACTGA
Translation:
MFTSRCLPLAAAVTALALLAGCANNNPYDTQSQSQGGMSKTAKYGGLGALAGAVAGAAIDHNNRGKGALIGA
AVAGAAAAGYGYYADKQEAELRRQMEGTGVEVQRQGDDIKLIMPGNITFATDSANIAPSFYAPLNNLANSFK
QYNQNTIEIVGYTDSTGSRQHNMDLSQRRAQSVAGYLTAQGVDGTRLSTRGMGPDQPIASNSTADGRAQNRR
VEVNLRPVPGAQGPAQTQPQY*
AnnotationID:3379GeneID:3371
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 14:02:27
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0833
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2885, pfam00691
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated 
(lipo)proteins. Score: 163, 4e-41
pfam00691, OmpA, OmpA family. The Pfam entry also includes MotB and related 
proteins. Score: 103, 3e-23






   
Genomic Context:






   
Comment:


















    ReferenceID:6745




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23887




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3371
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5401
                           PA0833_tr
                           translation of PA0833
                           237
                           99.99
                           99.99
                           0
                           1213.0
     

     
     
151069
                           gb|AAG04222.1|AE004518_3
                           (AE004518) hypothetical protein PA0833 [Pseudomonas aeruginosa PAO1]
                           237
                           99.99
                           99.99
                           0
                           1213.0
     

     
     
151071
                           gb|AAO54691.1|
                           (AE016860) ompA family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           239
                           77.82
                           84.93
                           12
                           931.0
     

     
     
151070
                           gb|AAN66398.1|AE016267_7
                           (AE016776) OmpA family protein [Pseudomonas putida KT2440]
                           241
                           77.59
                           84.64
                           9
                           946.0
     

     
     
151072
                           gb|AAD40344.1|U88088_22
                           (U88088) OmpA [Pseudomonas alcaligenes]
                           238
                           52.10
                           64.28
                           19
                           580.0
     

     






      

          
GC ORFID: 46373How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0833Glimmer Score: 

          
Start: 209898Stop: 210611

          
Length: 714


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0833 translation of PA0833Homolog Bit Score 471.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4337 (ORF: BLASTX 356.0), t_PA0833 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCACCTCCCGTTGCCTGCCTCTGGCCGCAGCCGTCACCGCACTGGCGCTGCTCGCCGGTTGTGCCAAC 
AACAACCCCTACGACACGCAAAGCCAAAGCCAGGGTGGCATGAGCAAGACGGCCAAGTACGGCGGACTGGGT 
GCGCTGGCCGGCGCCGTCGCCGGCGCCGCGATCGACCACAACAACCGTGGCAAGGGCGCGTTGATCGGCGCT 
GCCGTTGCCGGCGCGGCCGCCGCGGGTTATGGCTACTACGCCGACAAGCAGGAAGCCGAGCTGCGTCGGCAG 
ATGGAAGGCACCGGCGTGGAAGTGCAGCGCCAGGGCGACGACATCAAGCTGATCATGCCGGGCAACATCACC 
TTCGCCACCGATTCGGCGAACATCGCTCCGAGCTTCTACGCGCCGCTGAACAACCTGGCGAACTCGTTCAAG 
CAGTACAACCAGAACACCATCGAGATCGTCGGCTACACCGACAGCACCGGCAGCCGCCAGCACAACATGGAC 
CTGTCCCAGCGTCGTGCGCAGAGCGTGGCCGGCTACCTGACCGCCCAGGGCGTCGACGGCACCCGCCTGAGT 
ACCCGCGGCATGGGCCCGGACCAGCCGATCGCGAGCAACTCCACCGCCGACGGTCGCGCGCAGAACCGGCGC 
GTCGAGGTCAACCTGCGACCGGTTCCGGGCGCCCAGGGCCCGGCGCAGACCCAGCCGCAGTACTGA