ViewGene
Locus Name:
GeneID:
Location:

GeneID:3370
TrivialName: PA14_21970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21970
PAO1 Ortholog Locus:PA3249
Sequence Length:717
Protein Length:238
Start: 1910972
Stop: 1911688
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06637.1|AE004747_10 (AE004747) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 238/238 (100%), Positives = 238/238 (100%)
Sequence:
ATGCGTGACGAAGCGCTACCCACCGTAACGGCGATCTGCCGGGCGCTCAGCGAGCAGATCGGCCATGGTCTG
CTGCCGGCGGGTGGCAAGCTGCCGGCCGAGCGCAAGCTCAGCGAGCTGTTCGCGACGACCCGGATCACCCTG
CGCGAGGCGCTGATCCAGCTGGAGTCGCAGGGCCTGATCTACCGCGAGGAGCGCCGCGGCTGGTTCGTCTCC
CCCGAGCGGCTGGCCTATAACCCGCTGGTCCGCAGCCACTTCCATGCGATGGTCAGCGAACAGGGCCGGGTG
CCGGCGACCGAGGTTCTGTCGGCCCGGCAGATGCCGGCGAGCGCGGCGGTCTGCGAGCTGCTGGAGCTGCCG
GCGCTGTCCAGCGTCTACCAGATCCGCCGGGCGCGGCGGGTGGACGGGCGGCTGGTGCTGTATGTCGAGCAC
TACCTGAACGCGCAGTACTTCCCCGGAATCCTCGGCCACGACCTGACCCGCTCGCTGACCGAACTCTATGCC
AGCGAGTACGGCATCCACTATGGGCGGGTGCGTTTCGACATGGTGCCCACTGCACTGCATGCCGAGGCTGCG
GCGCCGCTGAAGGTGGCGGTGGGCAGCCCGGCCCTGCGCATCAGCCGGATCAACCGCGACCAGCGTGGTCGG
CTGATCGACTGCGACCTGGAGTTCTGGCGCCACGACGCCATCCATATCAGCGTCGAGGTACCGCAGTAA
Translation:
MRDEALPTVTAICRALSEQIGHGLLPAGGKLPAERKLSELFATTRITLREALIQLESQGLIYREERRGWFVS
PERLAYNPLVRSHFHAMVSEQGRVPATEVLSARQMPASAAVCELLELPALSSVYQIRRARRVDGRLVLYVEH
YLNAQYFPGILGHDLTRSLTELYASEYGIHYGRVRFDMVPTALHAEAAAPLKVAVGSPALRISRINRDQRGR
LIDCDLEFWRHDAIHISVEVPQ*
AnnotationID:3378GeneID:3370
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 16:04:32
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA3249
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:transcriptional regulator, GntR family
Functional Category Confidence Code:5
COGs:COG2188
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57343.1| (AE016870) transcriptional regulator, GntR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 239

 Score =  340 bits (872), Expect = 4e-93
 Identities = 169/236 (71%), Positives = 194/236 (82%)

>gb|AAN67348.1|AE016361_2 (AE016780) transcriptional regulator, GntR family [Pseudomonas
           putida KT2440]
          Length = 237

 Score =  325 bits (834), Expect = 1e-88
 Identities = 158/227 (69%), Positives = 187/227 (82%)






 
Structural Features:
COG2188, PhnF, Transcriptional regulators [Transcription]
CD-Length = 236 residues,  99.6% aligned
Score =  188 bits (478), Expect = 6e-49
Identities = 88/235 (37%), Positives = 120/235 (51%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6743




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23885




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32294




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3370_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3370
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5398
                           PA3249_tr
                           translation of PA3249
                           238
                           99.99
                           99.99
                           0
                           1215.0
     

     
     
151052
                           gb|AAG06637.1|AE004747_10
                           (AE004747) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           238
                           99.99
                           99.99
                           0
                           1215.0
     

     
     
5399
                           PA1142_tr
                           translation of PA1142
                           238
                           74.36
                           84.87
                           0
                           915.0
     

     
     
151053
                           gb|AAG04531.1|AE004544_3
                           (AE004544) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           238
                           74.36
                           84.87
                           0
                           915.0
     

     
     
151054
                           gb|AAO57343.1|
                           (AE016870) transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato str. DC3000]
                           239
                           70.71
                           81.17
                           1
                           870.0
     

     






      

          
GC ORFID: 46372How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3249Glimmer Score: 

          
Start: 3042959Stop: 3042243

          
Length: 717


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3249 translation of PA3249Homolog Bit Score 472.0

          
Other Homologs:  t_PA1142 (ORF: BLASTX 357.0), psyr_15may02_Scaffold16_revised_gene2635 (ORF: BLASTX 348.0), t_PA2802 (ORF: BLASTX 178.0), t_PA3249 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGACGAAGCGCTACCCACCGTAACGGCGATCTGCCGGGCGCTCAGCGAGCAGATCGGCCATGGTCTG 
CTGCCGGCGGGTGGCAAGCTGCCGGCCGAGCGCAAGCTCAGCGAGCTGTTCGCGACGACCCGGATCACCCTG 
CGCGAGGCGCTGATCCAGCTGGAGTCGCAGGGCCTGATCTACCGCGAGGAGCGCCGCGGCTGGTTCGTCTCC 
CCCGAGCGGCTGGCCTATAACCCGCTGGTCCGCAGCCACTTCCATGCGATGGTCAGCGAACAGGGCCGGGTG 
CCGGCGACCGAGGTTCTGTCGGCCCGGCAGATGCCGGCGAGCGCGGCGGTCTGCGAGCTGCTGGAGCTGCCG 
GCGCTGTCCAGCGTCTACCAGATCCGCCGGGCGCGGCGGGTGGACGGGCGGCTGGTGCTGTATGTCGAGCAC 
TACCTGAACGCGCAGTACTTCCCCGGAATCCTCGGCCACGACCTGACCCGCTCGCTGACCGAACTCTATGCC 
AGCGAGTACGGCATCCACTATGGGCGGGTGCGTTTCGACATGGTGCCCACTGCACTGCATGCCGAGGCTGCG 
GCGCCGCTGAAGGTGGCGGTGGGCAGCCCGGCCCTGCGCATCAGCCGGATCAACCGCGACCAGCGTGGTCGG 
CTGATCGACTGCGACCTGGAGTTCTGGCGCCACGACGCCATCCATATCAGCGTCGAGGTACCGCAGTAA