ViewGene

Locus Name:
GeneID:
Location:

GeneID:337
TrivialName: PA14_70850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70850
PAO1 Ortholog Locus:PA5368
Sequence Length:2034
Protein Length:677
Start: 6310708
Stop: 6308675
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08753.1|AE004948_9 (AE004948) membrane protein component of ABC phosphate transporter [Pseudomonas aeruginosa PAO1]
Identities = 675/677 (99%), Positives = 676/677 (99%)
Sequence:
ATGCAGCAGGCGCAGGTGCCCCTGCTGCTCAGCATCGAGGAGCAGAACCAGGTGGCCATGCGCGTTGGCGGC
CAGGGCGAGATCCTCTTCTTCAACGCCAAGACCGGCGTCGAACTGAAGCGTGTCGCTCTGCCGCTTCCGGCG
GGCAGCGAGATCCGCTCGATCGCCCAAGACCAGCCGGGCAGCCCGACGGTCGCCCTGGGCCTGTCCAACGGA
CAGGTGCTGGTGTTCCAGCACACCTACAAGGTCACCTACCCGGACAACAAGAAGACCATCACCCCGGAGATC
GCCTTCCCCTACGGCGAGACCCCGATCGGTCTCGATCCGCAGGGCCGCCCGCTGGAGCATGTGAGCATCAAT
GCCGGCGACGACAGCCTGCTGCTGGCTGGCTCCGTCGACAAGCAACTGCTGCTGTTGAGCATGACTCGCGAA
GAGAACATGCTGACCGGCGAAAGCACGCTGGACGAGGAGCGCATCGAACTCCCGCAGATCGCCGAACCGGTG
AAAGCCATCTACCTCGACCCGCGCAAGCAGTGGCTGTACGTGATCAACGGACGTGCCACCGCCGATGTGTTC
GACCTGCACAGCCGCCAGTTGAACGGTCGCTACAAGCTGCTGGAAGACCCCAACGCCGAGGTCACCGCGAGC
ACCCAGCTGTTGGGCGGCATCTCGCTGCTGGTGGGCGATTCCAAGGGTGGCATCGCCCAGTGGTTCATGGCT
CGCGATACCGACGGCGAACCGCGCCTGTCGCACGTTCGCGACTTCAACCTGGATGGCGCGCCGATCAGCGCC
ATCGCTCCGGAACAACGGCGCAAGGGCTTCATCGCCCTGGACGAGAAGGGCAACCTCGGCGTCTTCCACAGC
ACGGCGCACCGTACCCTGCTGGTCCAGCCGGTCGCCGACTCTTCCGGGGTCATCACCCTGTCGCCGCGGGCC
AACCGCCTGCTGCTGGAGCAGGGTGGCAAGATCCACCGCTTCGCCCTGAGCAACCCGCACCCGGAAATCTCC
TGGAGCGCGCTCTGGGGCAAGGTCTGGTACGAGAGCTACGACAAGCCGGCCTACGTCTGGCAGTCCACCGCC
GCGACCACCGACTTCGAACCGAAGCTGAGCCTCTCGCCGCTGACCTTCGGCACGCTCAAGGCCGCCTTCTAC
GCGATGATCCTGGCAGCTCCGCTGGCCATCGCGGCCGCCGTCTACACCGCCTATTTCATGGCTCCGGCGATG
CGCCGCAAGGTCAAGCCGGTGATCGAGCTGATGGAGGCGCTGCCGACGGTGATCCTCGGCTTCTTCGCCGGC
CTGTTCCTGGCACCCTACGTCGAAGGCCACCTGCCGGGGGTATTCAGCCTGCTGTTGCTGACGCCGCTGGGC
ATCCTTCTCGCCGGCCTGCTCTGGAGCCGCCTGCCCGAGCGTATCCGCCTGAGCCTGCCGGCCGGCTGGGAA
GCCGCGCTGCTGATCCCGGTGGTGCTCGCCGTCGGCGCCTTCGCCCTGTGGCTGAGCCCGCACCTGGAGACC
ACCTTCTTCGGCGGCGACATGCGCCTCTGGTTGAGCCACGACCTGGGCATCACCTACGACCAGCGAAATGCC
CTGATCGTCGGGCTGGCAATGGGCTTCGCGGTGATCCCGAATATCTTCTCGATCGCCGAAGACGCCATCTTC
AGCGTGCCGCGCAGCCTTACCTACGGCTCCCTGGCCCTGGGCGCCACGCCCTGGCAGACGCTGACCCGCGTG
GTGATCCTGACCGCCAGCCCAGGCATCTTCTCGGCGCTGATGATCGGCATGGGCCGCGCCGTCGGCGAGACC
ATGATCGTGCTGATGGCGACCGGCAATACCCCGGTGATGGAACTGAACATCTTCGAAGGCATGCGCACCCTG
GCAGCCAACGTCGCGGTGGAGATGCCCGAGTCGGAGGTCGGCGGCAGCCACTACCGCGTGCTGTTCCTCTCG
GCGCTGGTACTGCTGACGTTCACCTTCGTGATGAACACCCTGGCAGAGCTGATCCGTCAGCGTCTGCGCAAG
AAATACGCGTCGTTGTAA
Translation:
MQQAQVPLLLSIEEQNQVAMRVGGQGEILFFNAKTGVELKRVALPLPAGSEIRSIAQDQPGSPTVALGLSNG
QVLVFQHTYKVTYPDNKKTITPEIAFPYGETPIGLDPQGRPLEHVSINAGDDSLLLAGSVDKQLLLLSMTRE
ENMLTGESTLDEERIELPQIAEPVKAIYLDPRKQWLYVINGRATADVFDLHSRQLNGRYKLLEDPNAEVTAS
TQLLGGISLLVGDSKGGIAQWFMARDTDGEPRLSHVRDFNLDGAPISAIAPEQRRKGFIALDEKGNLGVFHS
TAHRTLLVQPVADSSGVITLSPRANRLLLEQGGKIHRFALSNPHPEISWSALWGKVWYESYDKPAYVWQSTA
ATTDFEPKLSLSPLTFGTLKAAFYAMILAAPLAIAAAVYTAYFMAPAMRRKVKPVIELMEALPTVILGFFAG
LFLAPYVEGHLPGVFSLLLLTPLGILLAGLLWSRLPERIRLSLPAGWEAALLIPVVLAVGAFALWLSPHLET
TFFGGDMRLWLSHDLGITYDQRNALIVGLAMGFAVIPNIFSIAEDAIFSVPRSLTYGSLALGATPWQTLTRV
VILTASPGIFSALMIGMGRAVGETMIVLMATGNTPVMELNIFEGMRTLAANVAVEMPESEVGGSHYRVLFLS
ALVLLTFTFVMNTLAELIRQRLRKKYASL*
AnnotationID:347GeneID:337
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:11
Gene Name:pstC
Confidence Code:1
GeneProduct:phosphate ABC transporter, permease protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4590
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58905.1| (AE016876) phosphate ABC transporter, permease protein, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 677

 Score = 1040 bits (2688), Expect = 0.0
 Identities = 504/677 (74%), Positives = 590/677 (87%)

>gb|AAN70893.1|AE016733_5 (AE016794) phosphate ABC transporter, permease protein [Pseudomonas
           putida KT2440]
          Length = 669

 Score = 1027 bits (2656), Expect = 0.0
 Identities = 503/669 (75%), Positives = 579/669 (86%)

>gb|AAN54777.1|AE015617_12 (AE015617) phosphate ABC transporter, permease protein, putative
           [Shewanella oneidensis MR-1]
          Length = 738

 Score =  622 bits (1604), Expect = e-177
 Identities = 332/681 (48%), Positives = 453/681 (66%), Gaps = 8/681 (1%)
Structural Features:
COG4590, ABC-type uncharacterized transport system, permease component
CD-Length = 733 residues,  94.1% aligned
Score =  991 bits (2564), Expect = 0.0
Identities = 386/705 (54%), Positives = 458/705 (64%), Gaps = 43/705 (6%)
Genomic Context:
Comment:
ReferenceID:677
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17819
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34731
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:337_cdd.html
URL:
ReferenceID:35666
Author/Investigator(s): Nikata T, Sakai Y, Shibat K, Kato J, Kuroda A, Ohtake H.
Title: Molecular analysis of the phosphate-specific transport (pst) operon of Pseudomonas aeruginosa.
PubMed: 8628229
MedLine:
Source:
Mol Gen Genet. 1996 Apr 10;250(6):692-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8628229
Homologs By Global Alignment
Gene ID:337

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
557 PA5368_tr translation of PA5368 677 99.70 99.85 0 3431.0
27181 gb|AAG08753.1|AE004948_9 (AE004948) membrane protein component of ABC phosphate transporter [Pseudomonas aeruginosa PAO1] 677 99.70 99.85 0 3431.0
27182 dbj|BAA08135.1| (D45195) a transmembrane component of the phosphate specific transport complex [Pseudomonas aeruginosa] 677 99.70 99.85 0 3431.0
27183 gb|AAO58905.1| (AE016876) phosphate ABC transporter, permease protein, putative [Pseudomonas syringae pv. tomato str. DC3000] 677 74.44 87.14 0 2688.0
27184 gb|AAN70893.1|AE016733_5 (AE016794) phosphate ABC transporter, permease protein [Pseudomonas putida KT2440] 677 74.29 85.52 8 2656.0
GC ORFID: 43339How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5368Glimmer Score:
Start: 5574397Stop: 5572364
Length: 2034
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA5368 translation of PA5368Homolog Bit Score 1326.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4197 (ORF: BLASTX 1142.0), t_PA5368 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGCAGGCGCAGGTGCCCCTGCTGCTCAGCATCGAGGAGCAGAACCAGGTGGCCATGCGCGTTGGCGGC
CAGGGCGAGATCCTCTTCTTCAACGCCAAGACCGGCGTCGAACTGAAGCGTGTCGCTCTGCCGCTTCCGGCG
GGCAGCGAGATCCGCTCGATCGCCCAAGACCAGCCGGGCAGCCCGACGGTCGCCCTGGGCCTGTCCAACGGA
CAGGTGCTGGTGTTCCAGCACACCTACAAGGTCACCTACCCGGACAACAAGAAGACCATCACCCCGGAGATC
GCCTTCCCCTACGGCGAGACCCCGATCGGTCTCGATCCGCAGGGCCGCCCGCTGGAGCATGTGAGCATCAAT
GCCGGCGACGACAGCCTGCTGCTGGCTGGCTCCGTCGACAAGCAACTGCTGCTGTTGAGCATGACTCGCGAA
GAGAACATGCTGACCGGCGAAAGCACGCTGGACGAGGAGCGCATCGAACTCCCGCAGATCGCCGAACCGGTG
AAAGCCATCTACCTCGACCCGCGCAAGCAGTGGCTGTACGTGATCAACGGACGTGCCACCGCCGATGTGTTC
GACCTGCACAGCCGCCAGTTGAACGGTCGCTACAAGCTGCTGGAAGACCCCAACGCCGAGGTCACCGCGAGC
ACCCAGCTGTTGGGCGGCATCTCGCTGCTGGTGGGCGATTCCAAGGGTGGCATCGCCCAGTGGTTCATGGCT
CGCGATACCGACGGCGAACCGCGCCTGTCGCACGTTCGCGACTTCAACCTGGATGGCGCGCCGATCAGCGCC
ATCGCTCCGGAACAACGGCGCAAGGGCTTCATCGCCCTGGACGAGAAGGGCAACCTCGGCGTCTTCCACAGC
ACGGCGCACCGTACCCTGCTGGTCCAGCCGGTCGCCGACTCTTCCGGGGTCATCACCCTGTCGCCGCGGGCC
AACCGCCTGCTGCTGGAGCAGGGTGGCAAGATCCACCGCTTCGCCCTGAGCAACCCGCACCCGGAAATCTCC
TGGAGCGCGCTCTGGGGCAAGGTCTGGTACGAGAGCTACGACAAGCCGGCCTACGTCTGGCAGTCCACCGCC
GCGACCACCGACTTCGAACCGAAGCTGAGCCTCTCGCCGCTGACCTTCGGCACGCTCAAGGCCGCCTTCTAC
GCGATGATCCTGGCAGCTCCGCTGGCCATCGCGGCCGCCGTCTACACCGCCTATTTCATGGCTCCGGCGATG
CGCCGCAAGGTCAAGCCGGTGATCGAGCTGATGGAGGCGCTGCCGACGGTGATCCTCGGCTTCTTCGCCGGC
CTGTTCCTGGCACCCTACGTCGAAGGCCACCTGCCGGGGGTATTCAGCCTGCTGTTGCTGACGCCGCTGGGC
ATCCTTCTCGCCGGCCTGCTCTGGAGCCGCCTGCCCGAGCGTATCCGCCTGAGCCTGCCGGCCGGCTGGGAA
GCCGCGCTGCTGATCCCGGTGGTGCTCGCCGTCGGCGCCTTCGCCCTGTGGCTGAGCCCGCACCTGGAGACC
ACCTTCTTCGGCGGCGACATGCGCCTCTGGTTGAGCCACGACCTGGGCATCACCTACGACCAGCGAAATGCC
CTGATCGTCGGGCTGGCAATGGGCTTCGCGGTGATCCCGAATATCTTCTCGATCGCCGAAGACGCCATCTTC
AGCGTGCCGCGCAGCCTTACCTACGGCTCCCTGGCCCTGGGCGCCACGCCCTGGCAGACGCTGACCCGCGTG
GTGATCCTGACCGCCAGCCCAGGCATCTTCTCGGCGCTGATGATCGGCATGGGCCGCGCCGTCGGCGAGACC
ATGATCGTGCTGATGGCGACCGGCAATACCCCGGTGATGGAACTGAACATCTTCGAAGGCATGCGCACCCTG
GCAGCCAACGTCGCGGTGGAGATGCCCGAGTCGGAGGTCGGCGGCAGCCACTACCGCGTGCTGTTCCTCTCG
GCGCTGGTACTGCTGACGTTCACCTTCGTGATGAACACCCTGGCAGAGCTGATCCGTCAGCGTCTGCGCAAG
AAATACGCGTCGTTGTAA