ViewGene

Locus Name:
GeneID:
Location:

GeneID:3368
TrivialName: PA14_58950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58950
PAO1 Ortholog Locus:
Sequence Length:687
Protein Length:228
Start: 5253822
Stop: 5254508
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84236.1| (AY273869) hypothetical protein RL112 [Pseudomonas aeruginosa]
Identities = 227/228 (99%), Positives = 227/228 (99%)
Sequence:
ATGAGTGACCCCAAGCTCAAGCCCTGCCCGCTCTGCGGCAGCACGAACATTCGAATGCTGGAACCCGAGCTG
CTCGACACCGATGCCTGGAACTGTGCCATTGAATGCCTGGACTGCCAGGTTCACATCGGGCCGTCCTACTGC
GAGCCAGACCCGGTAACAGCGAGGTATTCAGCACAGATCGACTGGAATAGACGCCCAAGCGCAAAAAACCAC
GCGGACGAGCGTGAGCAGTTCTTGATGGCCAACCTGCTCGCCGCCCTGGAGGTCGCACTGGGCGACGTAGCA
GCCCTGGCTATTGTCGATCGGGTAAGACAGGCCACAGACCGAATTTACCCAACTTCGAACCTCTCCCCTGTT
CCGCAGGCCTGGCTCGATGTACAGGCCGAGCGCCGGCGCCAGATCACCGTCGAAGGTTTCGATACCAGCAAC
GACGACGCTAGCGCTGGCCTGATCGCCCTGGCGGCCGGCTGCTACGCGCTCCATGCCGGCGGCATCGGCACC
GACTGGCCGGGCGGCATTCGGAATGGCTCTGCACTGTTCTGGCCCTGGGACGAAGAGTGGTGGAAGCCTAAG
TCGGCGCGCGAGAACCTGGTACGCGCCGGCGCCCTAGTGCTGGCCGAGATCGAGCGCCTGGACCGCTCCGCC
ACCGAGCAGGGCTCAACCTGCTGCAAGGGGGGCGCGTAA
Translation:
MSDPKLKPCPLCGSTNIRMLEPELLDTDAWNCAIECLDCQVHIGPSYCEPDPVTARYSAQIDWNRRPSAKNH
ADEREQFLMANLLAALEVALGDVAALAIVDRVRQATDRIYPTSNLSPVPQAWLDVQAERRRQITVEGFDTSN
DDASAGLIALAAGCYALHAGGIGTDWPGGIRNGSALFWPWDEEWWKPKSARENLVRAGALVLAEIERLDRSA
TEQGSTCCKGGA*
AnnotationID:3376GeneID:3368
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:21
Gene Name:RL112
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
CP5 (pseudomonas aeruginosa strain C, plasmid pKLC102)
Structural Features:
Genomic Context:
Comment:
ReferenceID:6739
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23881
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3368

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
151000 gb|AAP84236.1| (AY273869) hypothetical protein RL112 [Pseudomonas aeruginosa] 228 99.56 99.56 0 1217.0
GC ORFID: 46370How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL112Glimmer Score:
Start: 4517501Stop: 4518187
Length: 687
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_RL112 228 Homolog: No significant similarity () translation of RL112Homolog Bit Score 473.0
Other Homologs: t_RL112 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTGACCCCAAGCTCAAGCCCTGCCCGCTCTGCGGCAGCACGAACATTCGAATGCTGGAACCCGAGCTG
CTCGACACCGATGCCTGGAACTGTGCCATTGAATGCCTGGACTGCCAGGTTCACATCGGGCCGTCCTACTGC
GAGCCAGACCCGGTAACAGCGAGGTATTCAGCACAGATCGACTGGAATAGACGCCCAAGCGCAAAAAACCAC
GCGGACGAGCGTGAGCAGTTCTTGATGGCCAACCTGCTCGCCGCCCTGGAGGTCGCACTGGGCGACGTAGCA
GCCCTGGCTATTGTCGATCGGGTAAGACAGGCCACAGACCGAATTTACCCAACTTCGAACCTCTCCCCTGTT
CCGCAGGCCTGGCTCGATGTACAGGCCGAGCGCCGGCGCCAGATCACCGTCGAAGGTTTCGATACCAGCAAC
GACGACGCTAGCGCTGGCCTGATCGCCCTGGCGGCCGGCTGCTACGCGCTCCATGCCGGCGGCATCGGCACC
GACTGGCCGGGCGGCATTCGGAATGGCTCTGCACTGTTCTGGCCCTGGGACGAAGAGTGGTGGAAGCCTAAG
TCGGCGCGCGAGAACCTGGTACGCGCCGGCGCCCTAGTGCTGGCCGAGATCGAGCGCCTGGACCGCTCCGCC
ACCGAGCAGGGCTCAACCTGCTGCAAGGGGGGCGCGTAA