ViewGene
Locus Name:
GeneID:
Location:

GeneID:3367
TrivialName: PA14_10110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10110
PAO1 Ortholog Locus:
Sequence Length:1185
Protein Length:394
Start: 868546
Stop: 867362
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO55137.1| (AE016861) major facilitator family transporter [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 240/367 (65%), Positives = 298/367 (81%)
Sequence:
ATGACCGTCTTCACCAGCCCCGTTCCGGCCGCCGCCCCTCGCTCCACACTGAGCGTCGCGATCCTGGCCTTC
TCCGCGTTTCTCATCGTTACCACCGAATTTCTCATCGTCGGCCTGTTGCCGAGCCTGGCCCGCGACCTGCAG
ATATCCATCTCCGCGGCAGGCCGGCTGGTGACCCTGTTCGCCTTTACCGTGATGCTCTTCGGGCCGCCGCTG
ACCGCCGTGCTCGCCCACCTGCCACGCAAGCCGCTGTTCGTCGCCATCCTGCTGGTGTTCGCCCTGTCCAAC
GGCCTCGCCGCGCTCTCGACCGACCTCAGGCTGCTCGCCGTCGCCCGCTTCGTGCCGGCGCTGATGCTGCCG
GTGTTCTGGGGCACCGCCAGCGAAACGGCAGCGCAACTGGCCGGTACCGAGCGCGCCGGGCAGGCCATCGCC
AGGGTCTACCTGGGCATTTCCTGCGCGCTCCTGCTGGGCATTCCGCTCGGCACCCTGGCCGCCAACGGCATC
GGCTGGCGCGGCGCCTTCTGGATACTCGCCGGGCTGTCGCTGCTGATGGCCGTCGCCCTCGTCCTGTTCATG
CCCGCCGTGGACCGTGGCGAACGTCTCGATCTGCGCCGGCAGGCGCGGATATTCGGCGAACCGCTGTTCCTC
GCCAATGTCGCGCTGTCGGTGCTGGTGTTCAGTGCCATGTTCGTTTCATACACCTACCTGGCCGATATCCTC
GAACGTATCGCCGGGATCACTCCGGCGCGGATCGGCTGGTGGCTGATGGGCTTCGGCGCGGTAGGCCTGTTC
GGCAACTGGCTCGGCGGCAGGCTGGTCGACCGCTCGCCGCTGCGCGCCACCGCACTGTTCCTCGTCCTGCTC
GCGCTCGGCATGGCCGCCAGCGTCCCCCTGGCCGGCCAGCCGCTCCTGTTCTGCCTCGCACTGGCGCTTTGG
GGCGTGGCCAATACCGCGCTCTATCCGGTTTGCCAGGTGCGCGTGATGCGCTCGGTGCAGCATGCCCAGGCG
CTGGCCGCGACCAGCAACGTCGCCGCCGCCAATGCCGGGATCGGCCTCGGCGCGCTACTTGGCGGAGAGACC
ATCGCGACTCTCGGCCTGGAACGAATCGGCTTCGTCGCAGCGGCCCTCGCCGTACTCGGTCTGGCGCTGCTC
CCCGTCGTCGCGCGCCTGGCGCGACGACGCTGA
Translation:
MTVFTSPVPAAAPRSTLSVAILAFSAFLIVTTEFLIVGLLPSLARDLQISISAAGRLVTLFAFTVMLFGPPL
TAVLAHLPRKPLFVAILLVFALSNGLAALSTDLRLLAVARFVPALMLPVFWGTASETAAQLAGTERAGQAIA
RVYLGISCALLLGIPLGTLAANGIGWRGAFWILAGLSLLMAVALVLFMPAVDRGERLDLRRQARIFGEPLFL
ANVALSVLVFSAMFVSYTYLADILERIAGITPARIGWWLMGFGAVGLFGNWLGGRLVDRSPLRATALFLVLL
ALGMAASVPLAGQPLLFCLALALWGVANTALYPVCQVRVMRSVQHAQALAATSNVAAANAGIGLGALLGGET
IATLGLERIGFVAAALAVLGLALLPVVARLARRR*
AnnotationID:3375GeneID:3367
AnnotatorUID: danlee
Modification Date/Time: 2005-10-19 16:04:20
Gene Name:
Confidence Code:3
GeneProduct:putative transporter
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|28868823|ref|NP_791442.1|  major facilitator family transporter [Pseudomonas syringae pv. 
            tomato str. DC3000]
     Length=405
     Score =  473 bits (1217),  Expect = 5e-132
     Identities = 240/367 (65%), Positives = 298/367 (81%), Gaps = 0/367 (0%)

gi|63257697|gb|AAY38793.1|  General substrate transporter:Major facilitator superfamily [Pseudomonas 
            syringae pv. syringae B728a]
     Length=400
     Score =  473 bits (1216),  Expect = 7e-132
     Identities = 238/374 (63%), Positives = 301/374 (80%), Gaps = 0/374 (0%)

gi|9949028|gb|AAG06321.1|  probable MFS transporter [Pseudomonas aeruginosa PAO1]
gi|11351489|pir||F83279  probable MFS transporter PA2933 [imported] - Pseudomonas aeruginosa(strain PAO1)
     Length=392
     Score =  386 bits (992),  Expect = 6e-106
     Identities = 210/374 (56%), Positives = 265/374 (70%), Gaps = 2/374 (0%)







 
Structural Features:
COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].
             CD-Length = 394 residues,  83.2% aligned
             Score =  180 bits (458), Expect = 3e-46






   
Genomic Context:






   
Comment:


















    ReferenceID:6737




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17075




  
Author/Investigator(s):
        





  
Title:
        CDD search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3367_CDD.html


    		




 
URL:

















    ReferenceID:23879




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3367
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
150994
                           gb|AAO55137.1|
                           (AE016861) major facilitator family transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           405
                           59.75
                           76.04
                           11
                           1207.0
     

     
     
5396
                           PA2933_tr
                           translation of PA2933
                           409
                           51.83
                           65.03
                           32
                           987.0
     

     
     
150995
                           gb|AAG06321.1|AE004719_7
                           (AE004719) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           409
                           51.83
                           65.03
                           32
                           988.0
     

     
     
150997
                           emb|CAE33969.1|
                           (BX640447) putative sugar efflux transpoter [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           411
                           46.95
                           61.80
                           34
                           902.0
     

     
     
150998
                           emb|CAE41242.1|
                           (BX640413) putative sugar efflux transpoter [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           411
                           46.95
                           61.55
                           35
                           894.0
     

     






      

          
GC ORFID: 46369How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: psyr_15may02_Scaffold5_revised_gene6002Glimmer Score: 

          
Start: 4085391Stop: 4086575

          
Length: 1185


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: psyr_15may02_Scaffold5_revised_gene6002 related to: gi|15598129|ref|NP_251623.1| (NC_002516) probable MFS transporter [Pseudomonas aeruginosa] pir||F83279 probable MFS transporter PA2933 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG06321.1|AE00Homolog Bit Score 473.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1355 (ORF: BLASTX 353.0), psyr_15may02_Scaffold5_revised_gene6002 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGTCTTCACCAGCCCCGTTCCGGCCGCCGCCCCTCGCTCCACACTGAGCGTCGCGATCCTGGCCTTC 
TCCGCGTTTCTCATCGTTACCACCGAATTTCTCATCGTCGGCCTGTTGCCGAGCCTGGCCCGCGACCTGCAG 
ATATCCATCTCCGCGGCAGGCCGGCTGGTGACCCTGTTCGCCTTTACCGTGATGCTCTTCGGGCCGCCGCTG 
ACCGCCGTGCTCGCCCACCTGCCACGCAAGCCGCTGTTCGTCGCCATCCTGCTGGTGTTCGCCCTGTCCAAC 
GGCCTCGCCGCGCTCTCGACCGACCTCAGGCTGCTCGCCGTCGCCCGCTTCGTGCCGGCGCTGATGCTGCCG 
GTGTTCTGGGGCACCGCCAGCGAAACGGCAGCGCAACTGGCCGGTACCGAGCGCGCCGGGCAGGCCATCGCC 
AGGGTCTACCTGGGCATTTCCTGCGCGCTCCTGCTGGGCATTCCGCTCGGCACCCTGGCCGCCAACGGCATC 
GGCTGGCGCGGCGCCTTCTGGATACTCGCCGGGCTGTCGCTGCTGATGGCCGTCGCCCTCGTCCTGTTCATG 
CCCGCCGTGGACCGTGGCGAACGTCTCGATCTGCGCCGGCAGGCGCGGATATTCGGCGAACCGCTGTTCCTC 
GCCAATGTCGCGCTGTCGGTGCTGGTGTTCAGTGCCATGTTCGTTTCATACACCTACCTGGCCGATATCCTC 
GAACGTATCGCCGGGATCACTCCGGCGCGGATCGGCTGGTGGCTGATGGGCTTCGGCGCGGTAGGCCTGTTC 
GGCAACTGGCTCGGCGGCAGGCTGGTCGACCGCTCGCCGCTGCGCGCCACCGCACTGTTCCTCGTCCTGCTC 
GCGCTCGGCATGGCCGCCAGCGTCCCCCTGGCCGGCCAGCCGCTCCTGTTCTGCCTCGCACTGGCGCTTTGG 
GGCGTGGCCAATACCGCGCTCTATCCGGTTTGCCAGGTGCGCGTGATGCGCTCGGTGCAGCATGCCCAGGCG 
CTGGCCGCGACCAGCAACGTCGCCGCCGCCAATGCCGGGATCGGCCTCGGCGCGCTACTTGGCGGAGAGACC 
ATCGCGACTCTCGGCCTGGAACGAATCGGCTTCGTCGCAGCGGCCCTCGCCGTACTCGGTCTGGCGCTGCTC 
CCCGTCGTCGCGCGCCTGGCGCGACGACGCTGA