ViewGene
Locus Name:
GeneID:
Location:

GeneID:3366
TrivialName: PA14_05450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05450
PAO1 Ortholog Locus:PA0419
Sequence Length:723
Protein Length:240
Start: 481491
Stop: 480769
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03808.1|AE004479_3 (AE004479) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 233/240 (97%), Positives = 238/240 (99%)
Sequence:
ATGCGCCTGTCCCGCTTCTTCGTCGACCAGCCCCTCGCCCTCGGCCAGCACGACCTGCCCGAGACCCAGGCC
CACTACATCGGCCGCGTGCTGCGGCACGCCACGGGCGACGCCGTGCAACTGTTCGACGGCAGCGGCCGGGAA
TACCTCGGCGAGCTGGTCGAGGTCGGCAAGAAGAATGTCCGCGTCGAACTCCGCGAGCAGTTCGCCGGCCAG
CCCGACTCGCCCCTGCGTATCCACCTGGGGCAAGGCCTGTCGCGCGGCGAGCGGATGGACTGGGCGATCCAG
AAGGCCACCGAGCTGGGGGTGGCGGAAATCACCCCGATCGTCAGCGAGCGTTGCGAAGTGCGCCTGAAGGAC
GAGCGCGCCGACAAGCGCCTGCAACACTGGCGCCAGGTGGCGATCAGCGCCTGCGAGCAGTGCGGCCGTTCG
AGCCTGCCGCTGATCCATCCGCCGCTGGCCCTGGAGGACTGGCTGCGCGGGCGGGACGATGAGCTCAGGCTG
GTCCTGCACCCTGTGGCCGCCCCCCTGGCCAGCCATGTGCCGCCGTCGCGCCTGGCCTTCCTGGTGGGTCCc
aaAGGCggcctGAGCGATGCcGAGGTGGagcAggCaAAGGCGGCCGGCTTCCACGCCGCGCGCCTCGGCCCG
CGAGTGCTGCGCACCGAGACCGCGCCGGTGGTAGCGTTGGCGGTGGCCCAGCAACTCTGGGGCGACTTCGCC
TGA
Translation:
MRLSRFFVDQPLALGQHDLPETQAHYIGRVLRHATGDAVQLFDGSGREYLGELVEVGKKNVRVELREQFAGQ
PDSPLRIHLGQGLSRGERMDWAIQKATELGVAEITPIVSERCEVRLKDERADKRLQHWRQVAISACEQCGRS
SLPLIHPPLALEDWLRGRDDELRLVLHPVAAPLASHVPPSRLAFLVGPKGGLSDAEVEQAKAAGFHAARLGP
RVLRTETAPVVALAVAQQLWGDFA*
AnnotationID:3374GeneID:3366
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 08:08:06
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0419
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6735




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23877




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33744




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3366_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3366
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5395
                           PA0419_tr
                           translation of PA0419
                           240
                           97.08
                           99.16
                           0
                           1216.0
     

     
     
150957
                           gb|AAG03808.1|AE004479_3
                           (AE004479) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           240
                           97.08
                           99.16
                           0
                           1216.0
     

     
     
150958
                           gb|AAN70551.1|AE016697_6
                           (AE016792) conserved hypothetical protein TIGR00046 [Pseudomonas putida KT2440]
                           240
                           80.41
                           88.75
                           1
                           1021.0
     

     
     
150959
                           gb|AAO58503.1|
                           (AE016874) conserved hypothetical protein TIGR00046 [Pseudomonas syringae pv. tomato str. DC3000]
                           240
                           75.83
                           88.33
                           1
                           974.0
     

     
     
150965
                           emb|CAD02918.1|
                           (AL627277) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
                           247
                           46.15
                           62.75
                           11
                           534.0
     

     






      

          
GC ORFID: 46368How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0419Glimmer Score: 

          
Start: 6282833Stop: 6282111

          
Length: 723


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0419 translation of PA0419Homolog Bit Score 473.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3740 (ORF: BLASTX 371.0), t_PA0419 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCTGTCCCGCTTCTTCGTCGACCAGCCCCTCGCCCTCGGCCAGCACGACCTGCCCGAGACCCAGGCC 
CACTACATCGGCCGCGTGCTGCGGCACGCCACGGGCGACGCCGTGCAACTGTTCGACGGCAGCGGCCGGGAA 
TACCTCGGCGAGCTGGTCGAGGTCGGCAAGAAGAATGTCCGCGTCGAACTCCGCGAGCAGTTCGCCGGCCAG 
CCCGACTCGCCCCTGCGTATCCACCTGGGGCAAGGCCTGTCGCGCGGCGAGCGGATGGACTGGGCGATCCAG 
AAGGCCACCGAGCTGGGGGTGGCGGAAATCACCCCGATCGTCAGCGAGCGTTGCGAAGTGCGCCTGAAGGAC 
GAGCGCGCCGACAAGCGCCTGCAACACTGGCGCCAGGTGGCGATCAGCGCCTGCGAGCAGTGCGGCCGTTCG 
AGCCTGCCGCTGATCCATCCGCCGCTGGCCCTGGAGGACTGGCTGCGCGGGCGGGACGATGAGCTCAGGCTG 
GTCCTGCACCCTGTGGCCGCCCCCCTGGCCAGCCATGTGCCGCCGTCGCGCCTGGCCTTCCTGGTGGGTCCc 
aaAGGCggcctGAGCGATGCcGAGGTGGagcAggCaAAGGCGGCCGGCTTCCACGCCGCGCGCCTCGGCCCG 
CGAGTGCTGCGCACCGAGACCGCGCCGGTGGTAGCGTTGGCGGTGGCCCAGCAACTCTGGGGCGACTTCGCC 
TGA