ViewGene

Locus Name:
GeneID:
Location:

GeneID:3364
TrivialName: PA14_25660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25660
PAO1 Ortholog Locus:PA2967
Sequence Length:744
Protein Length:247
Start: 2243222
Stop: 2243965
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06355.1|AE004722_11 (AE004722) 3-oxoacyl-[acyl-carrier-protein] reductase [Pseudomonas aeruginosa PAO1]
Identities = 247/247 (100%), Positives = 247/247 (100%)
Sequence:
ATGAGTCTGCAAGGTAAGGTCGCATTGGTAACCGGCGCCAGCCGTGGCATCGGCCAGGCGATTGCGCTGGAA
CTGGGGCGCCTGGGTGCCGTGGTCATCGGCACCGCGACCAGCGCGTCCGGCGCCGAGAAGATCGCCGAAACC
CTCAAGGCCAATGGCGTCGAGGGTGCGGGCCTGGTCCTGGACGTTTCCAGCGACGAATCCGTAGCCGCGACC
CTGGAGCACATCCAGCAGCATCTCGGCCAACCGCTGATCGTGGTCAATAACGCCGGCATCACCCGCGATAAT
CTGCTGGTGCGCATGAAAGACGACGAGTGGTTCGATGTGGTCAACACCAACCTGAACAGTCTCTACCGTCTG
TCGAAAGCCGTTCTGCGCGGTATGACCAAGGCCCGCTGGGGGCGCATCATCAACATCGGTTCCGTGGTCGGC
GCCATGGGCAATGCCGGGCAAACCAACTATGCCGCGGCGAAGGCCGGCCTGGAAGGCTTCACCCGTGCGCTG
GCCCGGGAAGTCGGTTCGCGTGCCATTACCGTGAATGCGGTGGCGCCGGGCTTCATCGACACCGACATGACC
CGCGAGCTGCCGGAAGCCCAGCGCGAAGCGCTGCTGGGCCAGATTCCGCTGGGTCGCCTGGGGCAGGCGGAA
GAGATCGCCAAGGTGGTCGGCTTCCTCGCTTCGGACGGCGCAGCCTATGTGACCGGGGCCACCGTGCCGGTC
AATGGTGGGATGTACATGAGCTGA
Translation:
MSLQGKVALVTGASRGIGQAIALELGRLGAVVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAAT
LEHIQQHLGQPLIVVNNAGITRDNLLVRMKDDEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVG
AMGNAGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQREALLGQIPLGRLGQAE
EIAKVVGFLASDGAAYVTGATVPVNGGMYMS*
AnnotationID:3372GeneID:3364
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 06:06:23
Gene Name:fabG
Confidence Code:1
GeneProduct:3-oxoacyl-[acyl-carrier-protein] reductase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:short chain dehydrogenase
Functional Category Confidence Code:5
COGs:COG1028,pfam00106
Secondary Functional Category(ies):
EC Number:1.1.1.100
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57300.1| (AE016869) 3-oxoacyl-(acyl-carrier-protein) reductase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 247

 Score =  400 bits (1029), Expect = e-111
 Identities = 203/247 (82%), Positives = 227/247 (91%)

>gb|AAN67532.1|AE016381_9 (AE016781) 3-oxoacyl-(acyl-carrier-protein) reductase [Pseudomonas
           putida KT2440]
          Length = 246

 Score =  398 bits (1023), Expect = e-110
 Identities = 206/246 (83%), Positives = 222/246 (90%)

>gb|AAN55801.1|AE015717_2 (AE015717) 3-oxoacyl-(acyl-carrier-protein) reductase [Shewanella
           oneidensis MR-1]
          Length = 248

 Score =  306 bits (784), Expect = 7e-83
 Identities = 164/246 (66%), Positives = 194/246 (78%), Gaps = 3/246 (1%)

Structural Features:
COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues,  99.6% aligned
Score =  178 bits (453), Expect = 4e-46
Identities = 123/253 (48%), Positives = 155/253 (61%), Gaps = 12/253 (4%)

pfam00106, adh_short, short chain dehydrogenase.
CD-Length = 247 residues, 100.0% aligned
Score =  199 bits (506), Expect = 3e-52
Identities = 110/247 (44%), Positives = 148/247 (59%), Gaps = 10/247 (4%)
Genomic Context:
Comment:
ReferenceID:6731
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23873
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36083
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3364_cdd.html
URL:
ReferenceID:36438
Author/Investigator(s): Shen Z, Byers DM.
Title: Isolation of Vibrio harveyi acyl carrier protein and the fabG, acpP, and fabF genes involved in fatty acid biosynthesis.
PubMed: 8550484
MedLine:
Source:
J Bacteriol. 1996 Jan;178(2):571-3.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8550484
ReferenceID:38309
Author/Investigator(s): Hoang TT, Sullivan SA, Cusick JK, Schweizer HP.
Title: Beta-ketoacyl acyl carrier protein reductase (FabG) activity of the fatty acid biosynthetic pathway is a determining factor of 3-oxo-homoserine lactone acyl chain lengths.
PubMed: 12480888
MedLine:
Source:
Microbiology. 2002 Dec;148(Pt 12):3849-56.
Reference Type:Journal
Data:
URL:
ReferenceID:38310
Author/Investigator(s): Ren Q, Sierro N, Witholt B, Kessler B.
Title: FabG, an NADPH-dependent 3-ketoacyl reductase of Pseudomonas aeruginosa, provides precursors for medium-chain-length poly-3-hydroxyalkanoate biosynthesis in Escherichia coli.
PubMed: 10781572
MedLine:
Source:
J Bacteriol. 2000 May;182(10):2978-81.
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:3364

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5391 PA2967_tr translation of PA2967 247 99.99 99.99 0 1216.0
150699 gb|AAG06355.1|AE004722_11 (AE004722) 3-oxoacyl-[acyl-carrier-protein] reductase [Pseudomonas aeruginosa PAO1] 247 99.99 99.99 0 1216.0
150700 gb|AAB94395.1| (U91631) 3-oxoacyl-acyl carrier protein reductase [Pseudomonas aeruginosa] 247 99.99 99.99 0 1216.0
150702 gb|AAN67532.1|AE016381_9 (AE016781) 3-oxoacyl-(acyl-carrier-protein) reductase [Pseudomonas putida KT2440] 247 83.40 89.87 1 1023.0
150701 gb|AAO57300.1| (AE016869) 3-oxoacyl-(acyl-carrier-protein) reductase [Pseudomonas syringae pv. tomato str. DC3000] 247 82.18 91.90 0 1029.0
GC ORFID: 46366How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2967Glimmer Score:
Start: 2710703Stop: 2709960
Length: 744
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2967 translation of PA2967Homolog Bit Score 473.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3765 (ORF: BLASTX 167.0), t_PA1827 (ORF: BLASTX 141.0), t_PA2967 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTCTGCAAGGTAAGGTCGCATTGGTAACCGGCGCCAGCCGTGGCATCGGCCAGGCGATTGCGCTGGAA
CTGGGGCGCCTGGGTGCCGTGGTCATCGGCACCGCGACCAGCGCGTCCGGCGCCGAGAAGATCGCCGAAACC
CTCAAGGCCAATGGCGTCGAGGGTGCGGGCCTGGTCCTGGACGTTTCCAGCGACGAATCCGTAGCCGCGACC
CTGGAGCACATCCAGCAGCATCTCGGCCAACCGCTGATCGTGGTCAATAACGCCGGCATCACCCGCGATAAT
CTGCTGGTGCGCATGAAAGACGACGAGTGGTTCGATGTGGTCAACACCAACCTGAACAGTCTCTACCGTCTG
TCGAAAGCCGTTCTGCGCGGTATGACCAAGGCCCGCTGGGGGCGCATCATCAACATCGGTTCCGTGGTCGGC
GCCATGGGCAATGCCGGGCAAACCAACTATGCCGCGGCGAAGGCCGGCCTGGAAGGCTTCACCCGTGCGCTG
GCCCGGGAAGTCGGTTCGCGTGCCATTACCGTGAATGCGGTGGCGCCGGGCTTCATCGACACCGACATGACC
CGCGAGCTGCCGGAAGCCCAGCGCGAAGCGCTGCTGGGCCAGATTCCGCTGGGTCGCCTGGGGCAGGCGGAA
GAGATCGCCAAGGTGGTCGGCTTCCTCGCTTCGGACGGCGCAGCCTATGTGACCGGGGCCACCGTGCCGGTC
AATGGTGGGATGTACATGAGCTGA