ViewGene

Locus Name:
GeneID:
Location:

GeneID:3363
TrivialName: PA14_20260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20260
PAO1 Ortholog Locus:PA3388
Sequence Length:696
Protein Length:231
Start: 1746162
Stop: 1745467
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06776.1|AE004760_4 (AE004760) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 229/231 (99%), Positives = 229/231 (99%)
Sequence:
ATGACCCACAGCGTTTCTCCCATCGGCTACATCCGCTCCTGCTTCATGGAGAAGTTCGCCATCCCGCGCCAG
CCGCTGCTCGCGCCGGCGGCGCGGGGGACCCTGGAACTGCTGCCGCCGTTCGACCAGGTGGAAGCGCTGGAA
GGCCTGGAGCAGGTCAGCCATGTCTGGCTGCTGTTCCTCTTCCACCAGGCCCTGGAAGACAAGCCGCGACTG
AAGGTGCGCCCGCCGCGCCTGGGCGGCAACCGCTCGCTGGGAGTCTTCGCCACCCGCGCCACCCATCGGCCG
AACGGCATCGGCCAGTCGGTGGTGCGCCTGGAGGGCTTCGAAGCGGGGCGCCTGTGGCTGTCCGGAATCGAC
CTGCTCGACGGCACCCCGGTACTCGATATCAAGCCCTACGTACCCTACGCCGACGCCGTGGCCGACGCCCGC
AACGCCATCGCCGACGCGCCGCCGCCGGGCATCGCCGTGGAGTGGAGCGAGCAGGCGCGGCGCCAGGCCCAT
GAGCACGGCCAGCGGTTGCGGCAGCCGGTGGCCGAGCTGATCGAGCAATGCCTGGCCCAGGACCCGCGTCCG
GCCTACCAGAAGCCGGAGCCCGGGCGCCGCTACGGGGTGCGCCTGTGGGACCTCGACGTGCATTGGCACTAC
CCGCGCCCGGACCTGATCCGCGTGCTGGACGTCGCCCGCGGCGACTGA
Translation:
MTHSVSPIGYIRSCFMEKFAIPRQPLLAPAARGTLELLPPFDQVEALEGLEQVSHVWLLFLFHQALEDKPRL
KVRPPRLGGNRSLGVFATRATHRPNGIGQSVVRLEGFEAGRLWLSGIDLLDGTPVLDIKPYVPYADAVADAR
NAIADAPPPGIAVEWSEQARRQAHEHGQRLRQPVAELIEQCLAQDPRPAYQKPEPGRRYGVRLWDLDVHWHY
PRPDLIRVLDVARGD*
AnnotationID:3371GeneID:3363
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 08:08:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3388
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:6729
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23871
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32175
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3363_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3363

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5390 PA3388_tr translation of PA3388 231 99.13 99.13 0 1220.0
150666 gb|AAG06776.1|AE004760_4 (AE004760) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 231 99.13 99.13 0 1220.0
150667 gb|AAD53515.1|AF148964_2 (AF148964) RcsF [Pseudomonas aeruginosa] 231 99.13 99.13 0 1220.0
150668 gb|AAP29970.1| (AY214161) hypothetical protein [Pseudomonas putida] 231 75.32 83.54 1 929.0
150669 gb|AAN66813.1|AE016310_5 (AE016778) conserved hypothetical protein TIGR00104 [Pseudomonas putida KT2440] 233 73.81 83.26 3 921.0
GC ORFID: 46365How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3388Glimmer Score:
Start: 3207770Stop: 3208465
Length: 696
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3388 translation of PA3388Homolog Bit Score 474.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4773 (ORF: BLASTX 358.0), t_PA3388 (ORF: GLIMMER)
GC ORF Sequence
ATGACCCACAGCGTTTCTCCCATCGGCTACATCCGCTCCTGCTTCATGGAGAAGTTCGCCATCCCGCGCCAG
CCGCTGCTCGCGCCGGCGGCGCGGGGGACCCTGGAACTGCTGCCGCCGTTCGACCAGGTGGAAGCGCTGGAA
GGCCTGGAGCAGGTCAGCCATGTCTGGCTGCTGTTCCTCTTCCACCAGGCCCTGGAAGACAAGCCGCGACTG
AAGGTGCGCCCGCCGCGCCTGGGCGGCAACCGCTCGCTGGGAGTCTTCGCCACCCGCGCCACCCATCGGCCG
AACGGCATCGGCCAGTCGGTGGTGCGCCTGGAGGGCTTCGAAGCGGGGCGCCTGTGGCTGTCCGGAATCGAC
CTGCTCGACGGCACCCCGGTACTCGATATCAAGCCCTACGTACCCTACGCCGACGCCGTGGCCGACGCCCGC
AACGCCATCGCCGACGCGCCGCCGCCGGGCATCGCCGTGGAGTGGAGCGAGCAGGCGCGGCGCCAGGCCCAT
GAGCACGGCCAGCGGTTGCGGCAGCCGGTGGCCGAGCTGATCGAGCAATGCCTGGCCCAGGACCCGCGTCCG
GCCTACCAGAAGCCGGAGCCCGGGCGCCGCTACGGGGTGCGCCTGTGGGACCTCGACGTGCATTGGCACTAC
CCGCGCCCGGACCTGATCCGCGTGCTGGACGTCGCCCGCGGCGACTGA