ViewGene
Locus Name:
GeneID:
Location:

GeneID:3362
TrivialName: PA14_40030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40030
PAO1 Ortholog Locus:PA1894
Sequence Length:693
Protein Length:230
Start: 3566872
Stop: 3567564
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05283.1|AE004615_6 (AE004615) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 229/230 (99%), Positives = 230/230 (100%)
Sequence:
ATGCCGCCAACCAGCCCCACACCAACCAACCCGCATCCCAGGCTACCGCCTGATCACACAGGAAACCCCATG
AATACTCAGATTGCCCAGATCACCCAGAGTCTGGCAGCCAACGGCTGCGCCTATATCACCCCCAGCGACGCG
CTCTACGACGAGCAGGACTGGGAACTGATGAACCAGGTCCTGGCCAACTCGACCCTGCCGTGGGAGAAGATC
CTGATCGGCGACGCCGACGAGGAGAACGACCTCTACGTGGCCCGTTTCATGACCGACCGCGACCGTCCCACG
GTGGTCAACCATGCGCTGTCGGAGCTGATCATCCCGCGCGTCTGCAACGACAACGTGATGAGCCTGTTCCGC
AAGCTGATGGGCGACGACGCCTTCTACGTGCGGCGCATGCAGGTGAACCGGATGAAGGCCGGCTCGTTCATC
GGCCGGCACCTGGATACCGACAGCAACCCGGACTACCAGTACTCCATCGTCCTGCAGCTCGGCACCTACTTC
TCCGGCGGCCAGTTCGTGGTCTACGACCGCGATGGCAACCTGCGCAACGACATCAAGCCGGAGCCGCGCTCG
GTGATCATCAGCGATTGCAGCTATCCCCACGAGGTCCAGCGGGTGACCGCCGGCGAGCGCGTCTCGCTGGTG
TTCTTCGTCAGTCGCCATGCGGACCGGAACCGGCGGGTCTATTGA
Translation:
MPPTSPTPTNPHPRLPPDHTGNPMNTQIAQITQSLAANGCAYITPSDALYDEQDWELMNQVLANSTLPWEKI
LIGDADEENDLYVARFMTDRDRPTVVNHALSELIIPRVCNDNVMSLFRKLMGDDAFYVRRMQVNRMKAGSFI
GRHLDTDSNPDYQYSIVLQLGTYFSGGQFVVYDRDGNLRNDIKPEPRSVIISDCSYPHEVQRVTAGERVSLV
FFVSRHADRNRRVY*
AnnotationID:3370GeneID:3362
AnnotatorUID: diggins
Modification Date/Time: 2005-06-03 19:07:10
Gene Name:
Confidence Code:3
GeneProduct:putative enzyme
Cell Localization:()
Synonyms:PA1894
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03171
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily.
CD-Length = 96 residues,  93.8% aligned
Score = 38.2 bits (88), Expect = 9e-04






   
Genomic Context:






   
Comment:


















    ReferenceID:6727




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23869




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37034




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3362_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3362
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5389
                           PA1894_tr
                           translation of PA1894
                           230
                           99.56
                           99.99
                           0
                           1221.0
     

     
     
150665
                           gb|AAG05283.1|AE004615_6
                           (AE004615) hypothetical protein PA1894 [Pseudomonas aeruginosa PAO1]
                           230
                           99.56
                           99.99
                           0
                           1221.0
     

     






      

          
GC ORFID: 46364How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1894Glimmer Score: 

          
Start: 1387038Stop: 1386346

          
Length: 693


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1894 translation of PA1894Homolog Bit Score 474.0

          
Other Homologs:  t_PA1894 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCCAACCAGCCCCACACCAACCAACCCGCATCCCAGGCTACCGCCTGATCACACAGGAAACCCCATG 
AATACTCAGATTGCCCAGATCACCCAGAGTCTGGCAGCCAACGGCTGCGCCTATATCACCCCCAGCGACGCG 
CTCTACGACGAGCAGGACTGGGAACTGATGAACCAGGTCCTGGCCAACTCGACCCTGCCGTGGGAGAAGATC 
CTGATCGGCGACGCCGACGAGGAGAACGACCTCTACGTGGCCCGTTTCATGACCGACCGCGACCGTCCCACG 
GTGGTCAACCATGCGCTGTCGGAGCTGATCATCCCGCGCGTCTGCAACGACAACGTGATGAGCCTGTTCCGC 
AAGCTGATGGGCGACGACGCCTTCTACGTGCGGCGCATGCAGGTGAACCGGATGAAGGCCGGCTCGTTCATC 
GGCCGGCACCTGGATACCGACAGCAACCCGGACTACCAGTACTCCATCGTCCTGCAGCTCGGCACCTACTTC 
TCCGGCGGCCAGTTCGTGGTCTACGACCGCGATGGCAACCTGCGCAACGACATCAAGCCGGAGCCGCGCTCG 
GTGATCATCAGCGATTGCAGCTATCCCCACGAGGTCCAGCGGGTGACCGCCGGCGAGCGCGTCTCGCTGGTG 
TTCTTCGTCAGTCGCCATGCGGACCGGAACCGGCGGGTCTATTGA