ViewGene
Locus Name:
GeneID:
Location:

GeneID:3361
TrivialName: PA14_48650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48650
PAO1 Ortholog Locus:PA1210
Sequence Length:699
Protein Length:232
Start: 4326951
Stop: 4327649
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04599.1|AE004551_3 (AE004551) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 231/232 (99%), Positives = 232/232 (100%)
Sequence:
ATGATCGAACGTCGTCCCTTCGACCGTCTGGGCCATGCCAACCACGGCTGGCTGAACGCGCGTCATCATTTT
GCCTTCGCCGACTACTATGACCCGGAGCGCGAGGACTGGGGCCGCCTGCGGGTCTGGAACGATGACGAGATC
GCCGCCGGCAGCGGCTTCCCGCCGCACCCGCACCGCGACATGGAGATCATTACCTATGTCCGCGAAGGCGCG
ATCACCCACCAGGACAGCCTGGGCAACAAGGGCCGCACCGAGGCCGGCGACGTGCAGGTGATGAGCGCCGGT
ACCGGCATCGTCCATTCGGAGTACAACCTGGAAGCCGAGACCACCCGGATCTTCCAGATCTGGATCATCCCG
GACCGCCGCGGCGACCAGCCGCGCTGGGGCTCCAAACCGTTCCCGAAGGCCGAGCGCGACGGTCGTTTCGTC
ACTCTCGCCAGCGGCGACGAGCAGGACAGCGAAGCGCTGCACATCCGCGCCGACGCCGAGGTCGCCGCGGTG
ACCCTGAAGGCCGGCCAGAGCGCCGAGTACGCCCTGGAAAACGGTCGCCGCGCCTACCTGGTGCCGGCCACC
GGCAGCATCGAGGTCAACGGCGTGCGCGCCGAGGCCCGCGATGGCCTGGCGGTACGCGACGAACCGACCCTG
AAGGTCAcGGCCCTGGAAGacagcGAAGTGCTGCTGGTGGAAGTGGCCTGA
Translation:
MIERRPFDRLGHANHGWLNARHHFAFADYYDPEREDWGRLRVWNDDEIAAGSGFPPHPHRDMEIITYVREGA
ITHQDSLGNKGRTEAGDVQVMSAGTGIVHSEYNLEAETTRIFQIWIIPDRRGDQPRWGSKPFPKAERDGRFV
TLASGDEQDSEALHIRADAEVAAVTLKAGQSAEYALENGRRAYLVPATGSIEVNGVRAEARDGLAVRDEPTL
KVTALEDSEVLLVEVA*
AnnotationID:3369GeneID:3361
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 19:07:42
Gene Name:
Confidence Code:3
GeneProduct:putative pirin protein
Cell Localization:()
Synonyms:yhhW
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1741
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN82666.1|AE016768_84 (AE016768) Protein yhhW [Escherichia coli CFT073]
          Length = 231

 Score =  194 bits (493), Expect = 3e-49
 Identities = 102/232 (43%), Positives = 144/232 (62%), Gaps = 5/232 (2%)








 
Structural Features:
COG1741, Pirin-related protein 
CD-Length = 276 residues,  88.0% aligned
Score =  195 bits (498), Expect = 5e-51
Identities = 88/244 (36%), Positives = 115/244 (47%), Gaps = 13/244 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6725




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23867




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37536




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3361_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3361
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5388
                           PA1210_tr
                           translation of PA1210
                           232
                           99.56
                           99.99
                           0
                           1220.0
     

     
     
150632
                           gb|AAG04599.1|AE004551_3
                           (AE004551) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           232
                           99.56
                           99.99
                           0
                           1220.0
     

     
     
150633
                           gb|AAN68173.1|AE016450_3
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           232
                           71.12
                           84.05
                           0
                           912.0
     

     
     
150634
                           emb|CAE26354.1|
                           (BX572595) DUF209:Cupin domain [Rhodopseudomonas palustris CGA009]
                           232
                           70.25
                           79.74
                           0
                           870.0
     

     
     
150636
                           dbj|BAC52832.1|
                           (AP005962) blr7567 [Bradyrhizobium japonicum USDA 110]
                           232
                           69.82
                           80.17
                           0
                           859.0
     

     






      

          
GC ORFID: 46363How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1210Glimmer Score: 

          
Start: 626957Stop: 626259

          
Length: 699


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1210 translation of PA1210Homolog Bit Score 474.0

          
Other Homologs:  t_PA1210 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGAACGTCGTCCCTTCGACCGTCTGGGCCATGCCAACCACGGCTGGCTGAACGCGCGTCATCATTTT 
GCCTTCGCCGACTACTATGACCCGGAGCGCGAGGACTGGGGCCGCCTGCGGGTCTGGAACGATGACGAGATC 
GCCGCCGGCAGCGGCTTCCCGCCGCACCCGCACCGCGACATGGAGATCATTACCTATGTCCGCGAAGGCGCG 
ATCACCCACCAGGACAGCCTGGGCAACAAGGGCCGCACCGAGGCCGGCGACGTGCAGGTGATGAGCGCCGGT 
ACCGGCATCGTCCATTCGGAGTACAACCTGGAAGCCGAGACCACCCGGATCTTCCAGATCTGGATCATCCCG 
GACCGCCGCGGCGACCAGCCGCGCTGGGGCTCCAAACCGTTCCCGAAGGCCGAGCGCGACGGTCGTTTCGTC 
ACTCTCGCCAGCGGCGACGAGCAGGACAGCGAAGCGCTGCACATCCGCGCCGACGCCGAGGTCGCCGCGGTG 
ACCCTGAAGGCCGGCCAGAGCGCCGAGTACGCCCTGGAAAACGGTCGCCGCGCCTACCTGGTGCCGGCCACC 
GGCAGCATCGAGGTCAACGGCGTGCGCGCCGAGGCCCGCGATGGCCTGGCGGTACGCGACGAACCGACCCTG 
AAGGTCAcGGCCCTGGAAGacagcGAAGTGCTGCTGGTGGAAGTGGCCTGA