ViewGene
Locus Name:
GeneID:
Location:

GeneID:3360
TrivialName: PA14_49630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49630
PAO1 Ortholog Locus:PA1142
Sequence Length:717
Protein Length:238
Start: 4415919
Stop: 4416635
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04531.1|AE004544_3 (AE004544) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 238/238 (100%), Positives = 238/238 (100%)
Sequence:
ATGCGCGACGAGCCGTCCCGACCCCTGACGGTGATCTACCAGTCCCTGCGCGAGCAGATCGAGCGCGGCCTG
CTCGCGCGCGGCAGCAAGCTGCCCAGCGAACGGCAGTTGAGCGAGCTGTTCTCGACCACCCGCATCACCCTG
CGCGAGGCGCTCGGCCAGTTGGAGGACCAGGGCCTGATCTACCGCGAGGAACGCCGCGGCTGGTTCGTCTCG
CCGCAGCGGCTGCTGTACAACCCGCTGGTGCGCAGCCACTTCCACGCGATGGTCGCCGACCAGGGCCGGGTG
CCGGAGACCGAGGTGCTCGGCGCGGCGATGATCCCGGCCAGCGTCGACATCTGCCAGCGCCTGGAGCTGCCG
GCGCTGTCGCGGGTGTTCCAGATCCGCCGGGCGCGGCGGGTCGACGGGCGGCTGGTGCTGTACGTCGAGCAC
TACCTGAATCCCGCCTACTTTCCCGGCATCGAGCGCTTCGACCTGACTCGCTCGCTGACCGATCTCTACGCC
AACCACTACGGCATCCGCTACGGCCGGGTGCGCTTCGAGATGGTCCCGACCATCCTCCCGGCGGAGGCCGCC
GGGCCGCTGCGGGTCTCGGTGGGCAGCCCGGCGCTACAGATCGTGCGGGTCAACCGCGACCAGGCGGGCCGC
CTGATCGACTGCGACCTGGAGTACTGGCGCCACGACGCGCTACAGGTCAACGTCGAGGTGCCCGAGTAG
Translation:
MRDEPSRPLTVIYQSLREQIERGLLARGSKLPSERQLSELFSTTRITLREALGQLEDQGLIYREERRGWFVS
PQRLLYNPLVRSHFHAMVADQGRVPETEVLGAAMIPASVDICQRLELPALSRVFQIRRARRVDGRLVLYVEH
YLNPAYFPGIERFDLTRSLTDLYANHYGIRYGRVRFEMVPTILPAEAAGPLRVSVGSPALQIVRVNRDQAGR
LIDCDLEYWRHDALQVNVEVPE*
AnnotationID:3368GeneID:3360
AnnotatorUID: danlee
Modification Date/Time: 2004-09-13 13:01:21
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA1142
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2188
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2188, PhnF, Transcriptional regulators [Transcription]
        CD-Length = 236 residues,  99.6% aligned
        Score =  188 bits (480), Expect = 4e-49






   
Genomic Context:






   
Comment:


















    ReferenceID:6723




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23865




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3360
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5385
                           PA1142_tr
                           translation of PA1142
                           238
                           99.99
                           99.99
                           0
                           1220.0
     

     
     
150616
                           gb|AAG04531.1|AE004544_3
                           (AE004544) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           238
                           99.99
                           99.99
                           0
                           1220.0
     

     
     
5386
                           PA3249_tr
                           translation of PA3249
                           238
                           74.36
                           84.87
                           0
                           915.0
     

     
     
150617
                           gb|AAG06637.1|AE004747_10
                           (AE004747) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           238
                           74.36
                           84.87
                           0
                           915.0
     

     
     
150618
                           gb|AAN67348.1|AE016361_2
                           (AE016780) transcriptional regulator, GntR family [Pseudomonas putida KT2440]
                           238
                           64.70
                           76.05
                           1
                           798.0
     

     






      

          
GC ORFID: 46362How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1142Glimmer Score: 

          
Start: 537989Stop: 537273

          
Length: 717


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1142 translation of PA1142Homolog Bit Score 474.0

          
Other Homologs:  t_PA3249 (ORF: BLASTX 357.0), psyr_15may02_Scaffold16_revised_gene2635 (ORF: BLASTX 306.0), t_PA2802 (ORF: BLASTX 163.0), t_PA1142 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGACGAGCCGTCCCGACCCCTGACGGTGATCTACCAGTCCCTGCGCGAGCAGATCGAGCGCGGCCTG 
CTCGCGCGCGGCAGCAAGCTGCCCAGCGAACGGCAGTTGAGCGAGCTGTTCTCGACCACCCGCATCACCCTG 
CGCGAGGCGCTCGGCCAGTTGGAGGACCAGGGCCTGATCTACCGCGAGGAACGCCGCGGCTGGTTCGTCTCG 
CCGCAGCGGCTGCTGTACAACCCGCTGGTGCGCAGCCACTTCCACGCGATGGTCGCCGACCAGGGCCGGGTG 
CCGGAGACCGAGGTGCTCGGCGCGGCGATGATCCCGGCCAGCGTCGACATCTGCCAGCGCCTGGAGCTGCCG 
GCGCTGTCGCGGGTGTTCCAGATCCGCCGGGCGCGGCGGGTCGACGGGCGGCTGGTGCTGTACGTCGAGCAC 
TACCTGAATCCCGCCTACTTTCCCGGCATCGAGCGCTTCGACCTGACTCGCTCGCTGACCGATCTCTACGCC 
AACCACTACGGCATCCGCTACGGCCGGGTGCGCTTCGAGATGGTCCCGACCATCCTCCCGGCGGAGGCCGCC 
GGGCCGCTGCGGGTCTCGGTGGGCAGCCCGGCGCTACAGATCGTGCGGGTCAACCGCGACCAGGCGGGCCGC 
CTGATCGACTGCGACCTGGAGTACTGGCGCCACGACGCGCTACAGGTCAACGTCGAGGTGCCCGAGTAG