ViewGene

Locus Name:
GeneID:
Location:

GeneID:336
TrivialName: PA14_47810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47810
PAO1 Ortholog Locus:PA1270
Sequence Length:2040
Protein Length:679
Start: 4255183
Stop: 4253144
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04659.1|AE004556_9 (AE004556) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 678/679 (99%), Positives = 678/679 (99%)
Sequence:
ATGGCCAAGCCTTCCTTCTTTTCCTCCGACCTGGTGCAGGTGCTGCTGTGCCCGCGCCTGCACGAACTGCAG
TTCGCGGTGAAGGCCCTGCTGGCCGGCGGGTTGGCCCTGTACCTGGCCTTCAGCCTGGAGCTGGAGCAGCCG
CAATGGGCATTGATGACGGTGTTCGTGGTCAGCCAGCCCTATAGCGGCATGGTCCTGGCCAAGGGCATGTTC
CGCCTGATCGGCACCTGCGCCGGTGCGCTGGTGTCCATCGGCATGGTCGCGCTCTATGGTCAGGCGTCGCTG
CCCTTCCTCCTGCTGATGGCGCTCTGGCTGGCGTTCTGCACCGCCGGCGCGTCGCTGCTGCACAACCATGCG
TCCTACGGTTTCGTCCTGGCCGGCTACACCGCGGCGATCGTCGCCCTGCCGGCCAGCGCCGATCCGGCGACG
GTGTTCGACCAGGCGGTGGCCCGCTGCTCGGAGATCGGCCTGGGCATCCTCTGCGCGGCGCTGGTGAATGTA
CTGCTCTGGCCGCGGCGCCTGGAACGCCAGTTGGCGAACCAGGGCAAGGCGGCCTGGGAGGCCGGCTTGCAG
GCGGCCGCGGCGGAGCTGCGCGGCGCCGACGAACGCGGCGAGCTGCTCGCGGCGCTGGGGCGGATCGCCGCG
GCGGACGCCCAGCGCGACCACGCCTGGTTCGAGGGCGCACTCGGCCGCGCCCGTTCCCAGGCCTTGCGCGTG
CTTGGCCTCGACCTGCTCGGCCTGCTGCGCGCGGCGCGCAAGGTGGCTCGCGAGCGGAGGCTGCTCGATCCG
GCCAGCGCGCACGCCTTGCAGCCCTGGCTGGAAGAACTCGAGGCACTGTTGCGCGAGGGCCGCCAGGCCGAG
TTCGAGGCCTGCCGGCAGCGCTTGCGCCTGGCGCTGGACGCGGCGCACGGACAGTTGCACCTGTGCCTGGTC
TGCCTCGAACGCCTGCTCGGCGAGGCGAGGGCGGCCGGGCGCAGCGTCGAGGCGCTGGTCTATGGCGCGCCC
ACCCGCCAGGCGCCGGGCGCCATCGCCTGGCACCGGGACATCGAGCGCGGCGTGCTGTTCGGCCTGCGCAGC
GCCCTGGCGTTCCTCTGCGTAGCCGCGTTCTGGCTGGCCAGCGCCTGGCCGAGCGGGTTGGGCGCGGTGTCG
ATCACCGGCGTGGTGCTGAGTCTCTTCGCCAGCCGCGACAACCCGGCCCAGGCCGGCCTGAACTTCCTTCGC
GGGATTCTCCTGTCGATCCCGCTGGCCGGCTTCGTCGCACTGTTCTACCTGCCCGGCGTGGACGGCTTCCCG
CTGCTCTGCCTGGGCCTGGGCGTACCGCTGTTCTTCGCCGCGCTGTGCGTGAACCGGGCGAGCCTGGCCGGG
ATCGCCTCGCCGTTCTGCATCTTCTTCGTGAAGAACGTCGCGCCGAGCAACAGCATGAGCTACGACCTCGCG
CACTTCCTCAACAACGCCCTGTCGACGGTGCTCGGGGTGGCCTTCGCCGTGCTGGTGTTCAACCTGGTCAGC
CTGCGGCCGGGCGAACGCCATTACCGGCGCATGCTGCAGGCCACCCTCGGCGACCTGGCGCGGCTCACCCTG
CGCTCGCCGGCGCAGGCCGAGGCCTGGTTCGGCGGGCGCACCGCGGATCGCCTGATCCGCCTGGCGCAGCGC
TACGACCGTTTACCGGAGGGGCGCCGCCAGCCCTGGTCGGACGGCCTGATGGGACTCGACTTCGGCGACGAG
CTGCTCTACCTGCGGCAGTGCCTGGAGGAGGTCCCGGCGTCCCTGGCGCAGGCCCGCGACCGCTACCTGCGG
CGCCTGCGCCTGGCGCTGCTGGGCGATGGCCCGCGGGCCGAGCGTGAACACGCCCTCGACCCGCCGACCGCG
CGCCTGCTCAAGGCCCTGGCCGCCAGCCCGCTGGCCGGCAGCGAACGCGGCGAGCTGGCCGGCGCCGCGCTG
GTGCAGTTGCAGGCCACCTGGCGGCAGTGGTGCCGCAGCCATGCTCCGGCCGGGACGGCGCTGCGCGCGGAC
CCGCTCCCCGGAGCCGGGCGCTAG
Translation:
MAKPSFFSSDLVQVLLCPRLHELQFAVKALLAGGLALYLAFSLELEQPQWALMTVFVVSQPYSGMVLAKGMF
RLIGTCAGALVSIGMVALYGQASLPFLLLMALWLAFCTAGASLLHNHASYGFVLAGYTAAIVALPASADPAT
VFDQAVARCSEIGLGILCAALVNVLLWPRRLERQLANQGKAAWEAGLQAAAAELRGADERGELLAALGRIAA
ADAQRDHAWFEGALGRARSQALRVLGLDLLGLLRAARKVARERRLLDPASAHALQPWLEELEALLREGRQAE
FEACRQRLRLALDAAHGQLHLCLVCLERLLGEARAAGRSVEALVYGAPTRQAPGAIAWHRDIERGVLFGLRS
ALAFLCVAAFWLASAWPSGLGAVSITGVVLSLFASRDNPAQAGLNFLRGILLSIPLAGFVALFYLPGVDGFP
LLCLGLGVPLFFAALCVNRASLAGIASPFCIFFVKNVAPSNSMSYDLAHFLNNALSTVLGVAFAVLVFNLVS
LRPGERHYRRMLQATLGDLARLTLRSPAQAEAWFGGRTADRLIRLAQRYDRLPEGRRQPWSDGLMGLDFGDE
LLYLRQCLEEVPASLAQARDRYLRRLRLALLGDGPRAEREHALDPPTARLLKALAASPLAGSERGELAGAAL
VQLQATWRQWCRSHAPAGTALRADPLPGAGR*
AnnotationID:346GeneID:336
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 14:02:39
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA1270
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1289
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66775.1|AE016306_1 (AE016778) membrane protein, putative [Pseudomonas putida KT2440]
          Length = 662

 Score =  562 bits (1448), Expect = e-159
 Identities = 315/654 (48%), Positives = 408/654 (62%), Gaps = 12/654 (1%)

Structural Features:
COG1289, Predicted membrane protein.
CD-Length = 674 residues,  99.0% aligned
Score =  325 bits (833), Expect = 1e-89
Identities = 234/672 (34%), Positives = 295/672 (43%), Gaps = 21/672 (3%)
Genomic Context:
Comment:
ReferenceID:675
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17817
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37484
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:336_cdd.html
URL:
Homologs By Global Alignment
Gene ID:336

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
555 PA1270_tr translation of PA1270 679 99.85 99.85 0 3445.0
27178 gb|AAG04659.1|AE004556_9 (AE004556) hypothetical protein PA1270 [Pseudomonas aeruginosa PAO1] 679 99.85 99.85 0 3445.0
27179 gb|AAG06693.1|AE004753_1 (AE004753) hypothetical protein PA3305 [Pseudomonas aeruginosa PAO1] 697 46.62 60.11 51 1475.0
556 PA3305_tr translation of PA3305 698 46.41 60.02 53 1477.0
27180 gb|AAN66775.1|AE016306_1 (AE016778) membrane protein, putative [Pseudomonas putida KT2440] 689 46.29 59.94 37 1455.0
GC ORFID: 43338How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1270Glimmer Score:
Start: 698726Stop: 700765
Length: 2040
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1270 translation of PA1270Homolog Bit Score 1331.0
Other Homologs: t_PA3305 (ORF: BLASTX 567.0), t_PA1270 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCAAGCCTTCCTTCTTTTCCTCCGACCTGGTGCAGGTGCTGCTGTGCCCGCGCCTGCACGAACTGCAG
TTCGCGGTGAAGGCCCTGCTGGCCGGCGGGTTGGCCCTGTACCTGGCCTTCAGCCTGGAGCTGGAGCAGCCG
CAATGGGCATTGATGACGGTGTTCGTGGTCAGCCAGCCCTATAGCGGCATGGTCCTGGCCAAGGGCATGTTC
CGCCTGATCGGCACCTGCGCCGGTGCGCTGGTGTCCATCGGCATGGTCGCGCTCTATGGTCAGGCGTCGCTG
CCCTTCCTCCTGCTGATGGCGCTCTGGCTGGCGTTCTGCACCGCCGGCGCGTCGCTGCTGCACAACCATGCG
TCCTACGGTTTCGTCCTGGCCGGCTACACCGCGGCGATCGTCGCCCTGCCGGCCAGCGCCGATCCGGCGACG
GTGTTCGACCAGGCGGTGGCCCGCTGCTCGGAGATCGGCCTGGGCATCCTCTGCGCGGCGCTGGTGAATGTA
CTGCTCTGGCCGCGGCGCCTGGAACGCCAGTTGGCGAACCAGGGCAAGGCGGCCTGGGAGGCCGGCTTGCAG
GCGGCCGCGGCGGAGCTGCGCGGCGCCGACGAACGCGGCGAGCTGCTCGCGGCGCTGGGGCGGATCGCCGCG
GCGGACGCCCAGCGCGACCACGCCTGGTTCGAGGGCGCACTCGGCCGCGCCCGTTCCCAGGCCTTGCGCGTG
CTTGGCCTCGACCTGCTCGGCCTGCTGCGCGCGGCGCGCAAGGTGGCTCGCGAGCGGAGGCTGCTCGATCCG
GCCAGCGCGCACGCCTTGCAGCCCTGGCTGGAAGAACTCGAGGCACTGTTGCGCGAGGGCCGCCAGGCCGAG
TTCGAGGCCTGCCGGCAGCGCTTGCGCCTGGCGCTGGACGCGGCGCACGGACAGTTGCACCTGTGCCTGGTC
TGCCTCGAACGCCTGCTCGGCGAGGCGAGGGCGGCCGGGCGCAGCGTCGAGGCGCTGGTCTATGGCGCGCCC
ACCCGCCAGGCGCCGGGCGCCATCGCCTGGCACCGGGACATCGAGCGCGGCGTGCTGTTCGGCCTGCGCAGC
GCCCTGGCGTTCCTCTGCGTAGCCGCGTTCTGGCTGGCCAGCGCCTGGCCGAGCGGGTTGGGCGCGGTGTCG
ATCACCGGCGTGGTGCTGAGTCTCTTCGCCAGCCGCGACAACCCGGCCCAGGCCGGCCTGAACTTCCTTCGC
GGGATTCTCCTGTCGATCCCGCTGGCCGGCTTCGTCGCACTGTTCTACCTGCCCGGCGTGGACGGCTTCCCG
CTGCTCTGCCTGGGCCTGGGCGTACCGCTGTTCTTCGCCGCGCTGTGCGTGAACCGGGCGAGCCTGGCCGGG
ATCGCCTCGCCGTTCTGCATCTTCTTCGTGAAGAACGTCGCGCCGAGCAACAGCATGAGCTACGACCTCGCG
CACTTCCTCAACAACGCCCTGTCGACGGTGCTCGGGGTGGCCTTCGCCGTGCTGGTGTTCAACCTGGTCAGC
CTGCGGCCGGGCGAACGCCATTACCGGCGCATGCTGCAGGCCACCCTCGGCGACCTGGCGCGGCTCACCCTG
CGCTCGCCGGCGCAGGCCGAGGCCTGGTTCGGCGGGCGCACCGCGGATCGCCTGATCCGCCTGGCGCAGCGC
TACGACCGTTTACCGGAGGGGCGCCGCCAGCCCTGGTCGGACGGCCTGATGGGACTCGACTTCGGCGACGAG
CTGCTCTACCTGCGGCAGTGCCTGGAGGAGGTCCCGGCGTCCCTGGCGCAGGCCCGCGACCGCTACCTGCGG
CGCCTGCGCCTGGCGCTGCTGGGCGATGGCCCGCGGGCCGAGCGTGAACACGCCCTCGACCCGCCGACCGCG
CGCCTGCTCAAGGCCCTGGCCGCCAGCCCGCTGGCCGGCAGCGAACGCGGCGAGCTGGCCGGCGCCGCGCTG
GTGCAGTTGCAGGCCACCTGGCGGCAGTGGTGCCGCAGCCATGCTCCGGCCGGGACGGCGCTGCGCGCGGAC
CCGCTCCCCGGAGCCGGGCGCTAG