ViewGene
Locus Name:
GeneID:
Location:

GeneID:3359
TrivialName: PA14_49700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49700
PAO1 Ortholog Locus:PA1136
Sequence Length:732
Protein Length:243
Start: 4422458
Stop: 4421727
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04525.1|AE004543_9 (AE004543) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 240/243 (98%), Positives = 241/243 (99%)
Sequence:
ATGACCGACTACGCCAGCCTTCTCTTCGACAGCGTCGCCCGGCTGCGCAAGGCCGCTACCACCGAGGCAGTC
TGCCGCGAGATGGTGGAGTTCGCCGCACGCCTGGGCTTCGACCGGGTGATCGTCTGCAGCCTGTTCCCCCGC
CCCGGCGAGGACGAACTGATCGACGAGCTGTTCTTCGTCCATGGCGACTGGGCTGAAGGGCGCAGCGCCCAG
GAGCGCGACGCCTATCTTCTGCACTGTCCGGTCACCCGGCACATCCTCGAACTGGACGAGCCGTTCTTCTGG
TCGAAGAACCCCTCGGAGGATCCGGCGCGCATGACCTACCGCATCGTCCGTGGGGTCCGCGACCTCGGCCAG
GTCAATGGCATGCAGGTGCCGGTGTTCGGCCGCAACGGTCTGGAGGGCGCGGTGTCTTTCGCCGGCGAGCGG
CTGGACCTGAATGCCGGTTGCAAGCTCGCCGCCCAGGCCTTCTGCCCGATCCTGTTCTTCGCCCTGAAACGC
CTGCGCGGCCCTGTGTCGGCGGGCGATGCGCAAGCGCTCAGCGAGCGCGAGCGGGAAGTCCTGCAATGGATC
GCCCTGGGCAAGCAGCAGGCGGAGGTGGCGGCGATTCTGATGATTTCCGAGCGCACCGTGGAGAATCACCTG
CGTGCCGCCCGCCGCCGTCTCGGCGCGGCGTCCACCGCCCAGGCGGTGGCGCGGGCGCTGCGCCTGGGCGAT
ATCGAGGTCTGA
Translation:
MTDYASLLFDSVARLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAEGRSAQ
ERDAYLLHCPVTRHILELDEPFFWSKNPSEDPARMTYRIVRGVRDLGQVNGMQVPVFGRNGLEGAVSFAGER
LDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSEREREVLQWIALGKQQAEVAAILMISERTVENHL
RAARRRLGAASTAQAVARALRLGDIEV*
AnnotationID:3367GeneID:3359
AnnotatorUID: danlee
Modification Date/Time: 2004-09-08 17:05:56
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA1136
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03472
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03472, Autoind_bind, Autoinducer binding domain. This domain is found in a large
family of transcriptional regulators; it specifically binds to autoinducer molecules.
      CD-Length = 150 residues,  99.3% aligned
      Score =  110 bits (275), Expect = 2e-25






   
Genomic Context:






   
Comment:


















    ReferenceID:6721




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23863




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3359
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5384
                           PA1136_tr
                           translation of PA1136
                           243
                           98.76
                           99.17
                           0
                           1221.0
     

     
     
150615
                           gb|AAG04525.1|AE004543_9
                           (AE004543) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           243
                           98.76
                           99.17
                           0
                           1221.0
     

     






      

          
GC ORFID: 46361How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1136Glimmer Score: 

          
Start: 531450Stop: 532181

          
Length: 732


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1136 translation of PA1136Homolog Bit Score 474.0

          
Other Homologs:  t_PA1136 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGACTACGCCAGCCTTCTCTTCGACAGCGTCGCCCGGCTGCGCAAGGCCGCTACCACCGAGGCAGTC 
TGCCGCGAGATGGTGGAGTTCGCCGCACGCCTGGGCTTCGACCGGGTGATCGTCTGCAGCCTGTTCCCCCGC 
CCCGGCGAGGACGAACTGATCGACGAGCTGTTCTTCGTCCATGGCGACTGGGCTGAAGGGCGCAGCGCCCAG 
GAGCGCGACGCCTATCTTCTGCACTGTCCGGTCACCCGGCACATCCTCGAACTGGACGAGCCGTTCTTCTGG 
TCGAAGAACCCCTCGGAGGATCCGGCGCGCATGACCTACCGCATCGTCCGTGGGGTCCGCGACCTCGGCCAG 
GTCAATGGCATGCAGGTGCCGGTGTTCGGCCGCAACGGTCTGGAGGGCGCGGTGTCTTTCGCCGGCGAGCGG 
CTGGACCTGAATGCCGGTTGCAAGCTCGCCGCCCAGGCCTTCTGCCCGATCCTGTTCTTCGCCCTGAAACGC 
CTGCGCGGCCCTGTGTCGGCGGGCGATGCGCAAGCGCTCAGCGAGCGCGAGCGGGAAGTCCTGCAATGGATC 
GCCCTGGGCAAGCAGCAGGCGGAGGTGGCGGCGATTCTGATGATTTCCGAGCGCACCGTGGAGAATCACCTG 
CGTGCCGCCCGCCGCCGTCTCGGCGCGGCGTCCACCGCCCAGGCGGTGGCGCGGGCGCTGCGCCTGGGCGAT 
ATCGAGGTCTGA