ViewGene
Locus Name:
GeneID:
Location:

GeneID:3358
TrivialName: PA14_51240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51240
PAO1 Ortholog Locus:PA1013
Sequence Length:711
Protein Length:236
Start: 4553868
Stop: 4553158
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04402.1|AE004533_13 (AE004533) phosphoribosylaminoimidazole-succinocarboxamide synthase [Pseudomonas aeruginosa PAO1]
Identities = 236/236 (100%), Positives = 236/236 (100%)
Sequence:
ATGGAAAAACGCGAAGAACTCTACCGCGGCAAAGCCAAGTCGGTTTACCAGACCGACGATGCCGATCGTCTC
ATCCTGCTGTTCCGCAACGACACCTCCGCCTTCGACGGCAAGCGCATCGAACAGCTCGATCGCAAGGGCGCG
GTGAACAACAAGTTCAACGCCTTCATCATGCAGAAGCTGGAAGCTGCCGGCATTCCGACCCAGTTCGACAAG
CTGCTGTCGGATACCGAGTGCCTGGTGAAGAAGCTCGACATGATCCCGGTCGAGTGCGTGGTGCGCAATTTT
GCCGCCGGCAGCCTGGTGCGTCGCCTCGGCGTGGAAGAGGGCATCGCCCTGACTCCTCCCACCTTCGAGTTG
TTCCTGAAGAACGACGCCCTGGGCGATCCGTTCATCAACGAATCCCACGTCCAGGCCTTCGGCTGGGCCACT
CCCGAGCAGCTGGCGCAGATGAAGACCTATTCCTTCAAGGTCAATGAAGTGCTGAACAAGCTGTTCGACGAC
GCCGGTCTGCTGCTGGTGGACTTCAAGCTGGAGTTCGGCCTGTTCCATGGCCAGATTGTCCTCGGCGATGAG
TTTAGCCCGGACGGCTGCCGTCTGTGGGACAAGGAAACCCGCAAGAAGATGGACAAGGACCGCTTCCGCCAG
GGCCTCGGCGATGTGATCGAAGCCTACGAAGAGGTAGCCAAGCGCCTGGGCGTGCCGCTTTAA
Translation:
MEKREELYRGKAKSVYQTDDADRLILLFRNDTSAFDGKRIEQLDRKGAVNNKFNAFIMQKLEAAGIPTQFDK
LLSDTECLVKKLDMIPVECVVRNFAAGSLVRRLGVEEGIALTPPTFELFLKNDALGDPFINESHVQAFGWAT
PEQLAQMKTYSFKVNEVLNKLFDDAGLLLVDFKLEFGLFHGQIVLGDEFSPDGCRLWDKETRKKMDKDRFRQ
GLGDVIEAYEEVAKRLGVPL*
AnnotationID:3366GeneID:3358
AnnotatorUID: danlee
Modification Date/Time: 2004-05-17 16:04:06
Gene Name:purC
Confidence Code:2
GeneProduct:phosphoribosylaminoimidazole-succinocarboxamide synthase
Cell Localization:()
Synonyms:PA1013
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0152, pfam01259
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Purine metabolism
Homology:






 
Structural Features:
COG0152, PurC, Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 
      CD-Length = 247 residues,  95.1% aligned
      Score =  306 bits (785), Expect = 2e-84
pfam01259, SAICAR_synt, SAICAR synthetase. Score: 256, 2e-69






   
Genomic Context:






   
Comment:


















    ReferenceID:6719




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23861




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3358
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5383
                           PA1013_tr
                           translation of PA1013
                           236
                           99.99
                           99.99
                           0
                           1219.0
     

     
     
150531
                           gb|AAG04402.1|AE004533_13
                           (AE004533) phosphoribosylaminoimidazole-succinocarboxamide synthase [Pseudomonas aeruginosa PAO1]
                           236
                           99.99
                           99.99
                           0
                           1219.0
     

     
     
150532
                           gb|AAN66864.1|AE016314_11
                           (AE016778) phosphoribosylaminoimidazole-succinocarboxamide synthase [Pseudomonas putida KT2440]
                           236
                           90.25
                           93.22
                           0
                           1105.0
     

     
     
150533
                           gb|AAO57411.1|
                           (AE016870) phosphoribosylaminoimidazole-succinocarboxamide synthase [Pseudomonas syringae pv. tomato str. DC3000]
                           236
                           88.55
                           92.37
                           0
                           1087.0
     

     
     
150534
                           emb|CAE15118.1|
                           (BX571868) phosphoribosylaminoimidazole-succinocarboxamide synthase (5'-phosphoribosyl-5-aminoimidazole-4-N- succinocarboxamide synthase) [Photorhabdus luminescens subsp. laumondii TTO1]
                           237
                           75.10
                           83.96
                           1
                           926.0
     

     






      

          
GC ORFID: 46360How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1013Glimmer Score: 

          
Start: 400039Stop: 400749

          
Length: 711


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1013 translation of PA1013Homolog Bit Score 474.0

          
Other Homologs:  t_PA1013 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAAAACGCGAAGAACTCTACCGCGGCAAAGCCAAGTCGGTTTACCAGACCGACGATGCCGATCGTCTC 
ATCCTGCTGTTCCGCAACGACACCTCCGCCTTCGACGGCAAGCGCATCGAACAGCTCGATCGCAAGGGCGCG 
GTGAACAACAAGTTCAACGCCTTCATCATGCAGAAGCTGGAAGCTGCCGGCATTCCGACCCAGTTCGACAAG 
CTGCTGTCGGATACCGAGTGCCTGGTGAAGAAGCTCGACATGATCCCGGTCGAGTGCGTGGTGCGCAATTTT 
GCCGCCGGCAGCCTGGTGCGTCGCCTCGGCGTGGAAGAGGGCATCGCCCTGACTCCTCCCACCTTCGAGTTG 
TTCCTGAAGAACGACGCCCTGGGCGATCCGTTCATCAACGAATCCCACGTCCAGGCCTTCGGCTGGGCCACT 
CCCGAGCAGCTGGCGCAGATGAAGACCTATTCCTTCAAGGTCAATGAAGTGCTGAACAAGCTGTTCGACGAC 
GCCGGTCTGCTGCTGGTGGACTTCAAGCTGGAGTTCGGCCTGTTCCATGGCCAGATTGTCCTCGGCGATGAG 
TTTAGCCCGGACGGCTGCCGTCTGTGGGACAAGGAAACCCGCAAGAAGATGGACAAGGACCGCTTCCGCCAG 
GGCCTCGGCGATGTGATCGAAGCCTACGAAGAGGTAGCCAAGCGCCTGGGCGTGCCGCTTTAA