ViewGene
Locus Name:
GeneID:
Location:

GeneID:3357
TrivialName: PA14_53920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53920
PAO1 Ortholog Locus:PA0797
Sequence Length:723
Protein Length:240
Start: 4781552
Stop: 4782274
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04186.1|AE004515_2 (AE004515) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 240/240 (100%), Positives = 240/240 (100%)
Sequence:
ATGACCCAGAACCCGCCCCCTCTCGAAATTGCCCATGACGACGGCGAGACCTTGTCGGAACACGTCTTCCGC
AAGATCCAGAGCGCCATCGTCAGCGGCGAGATCGCGCCGGGCAGCAAGATCTCCGAGCCGGAGCTGGCGCGC
ACCTACGGCATCAGCCGCGGCCCGCTGCGCGAGGCGATCCACCGCCTGGAAGGCCTGCGCCTGCTGGTGCGG
GTGCCGCATGTCGGGGCGCGGGTGGTGTCGCTGAGCCACGCCGAGCTGATCGAACTCTACGAGATCCGCGAG
TCCCTGGAAGGCATGGCCTGCCGACTGGCCGCCGAGCGCATGAGCCAGGCCGAGATCGACGAACTGCGCCGG
GTGCTCGACACCCACGAGCGCGACGAGGCGTTCCAGGCCGGGCGCGGCTATTACCAGCAGGAAGGCGACTAC
GACTTCCACTACCGGATCATCCAGGGCAGCGGCAACGCCACCCTCACCCGCATGCTCTGCGGCGAGCTCTAC
CAACTGGTGCGGATGTACCGCATCCAGTACTCGACCACACCGAACCGGCCGCGCCAGGCCTTCGCCGAACAC
CACCGCATTCTCGACGCCATCGCCGACCGTGACGGCGAACTGGCCGAGCTGCTGATGCGCCGCCACATCAGT
GCGTCGCGCCGCAATATCGAGCGCCAGCTGGAACCCCAGCCGGCGAAGCTCGCCTCCGCTTCCTCCACCGTC
TAA
Translation:
MTQNPPPLEIAHDDGETLSEHVFRKIQSAIVSGEIAPGSKISEPELARTYGISRGPLREAIHRLEGLRLLVR
VPHVGARVVSLSHAELIELYEIRESLEGMACRLAAERMSQAEIDELRRVLDTHERDEAFQAGRGYYQQEGDY
DFHYRIIQGSGNATLTRMLCGELYQLVRMYRIQYSTTPNRPRQAFAEHHRILDAIADRDGELAELLMRRHIS
ASRRNIERQLEPQPAKLASASSTV*
AnnotationID:3365GeneID:3357
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 16:04:39
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA0797
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1802, GntR, Transcriptional regulators [Transcription].  Score: 154, 2e-38
COG2186, FadR, Transcriptional regulators [Transcription].  Score: 113, 3e-26






   
Genomic Context:






   
Comment:


















    ReferenceID:6717




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23859




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3357
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5382
                           PA0797_tr
                           translation of PA0797
                           240
                           99.99
                           99.99
                           0
                           1219.0
     

     
     
150521
                           gb|AAG04186.1|AE004515_2
                           (AE004515) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           240
                           99.99
                           99.99
                           0
                           1219.0
     

     
     
150523
                           gb|AAN67946.1|AE016427_1
                           (AE016782) transcriptional regulator, GntR family [Pseudomonas putida KT2440]
                           244
                           81.55
                           86.88
                           10
                           983.0
     

     
     
150522
                           gb|AAO55800.1|
                           (AE016864) transcriptional regulator, GntR family [Pseudomonas syringae pv. tomato str. DC3000]
                           245
                           80.40
                           86.12
                           18
                           990.0
     

     
     
150525
                           dbj|BAC94292.1|
                           (AP005336) transcriptional regulator [Vibrio vulnificus YJ016]
                           244
                           51.63
                           66.39
                           17
                           586.0
     

     






      

          
GC ORFID: 46359How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0797Glimmer Score: 

          
Start: 172355Stop: 171633

          
Length: 723


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0797 translation of PA0797Homolog Bit Score 474.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1061 (ORF: BLASTX 391.0), t_PA0797 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCAGAACCCGCCCCCTCTCGAAATTGCCCATGACGACGGCGAGACCTTGTCGGAACACGTCTTCCGC 
AAGATCCAGAGCGCCATCGTCAGCGGCGAGATCGCGCCGGGCAGCAAGATCTCCGAGCCGGAGCTGGCGCGC 
ACCTACGGCATCAGCCGCGGCCCGCTGCGCGAGGCGATCCACCGCCTGGAAGGCCTGCGCCTGCTGGTGCGG 
GTGCCGCATGTCGGGGCGCGGGTGGTGTCGCTGAGCCACGCCGAGCTGATCGAACTCTACGAGATCCGCGAG 
TCCCTGGAAGGCATGGCCTGCCGACTGGCCGCCGAGCGCATGAGCCAGGCCGAGATCGACGAACTGCGCCGG 
GTGCTCGACACCCACGAGCGCGACGAGGCGTTCCAGGCCGGGCGCGGCTATTACCAGCAGGAAGGCGACTAC 
GACTTCCACTACCGGATCATCCAGGGCAGCGGCAACGCCACCCTCACCCGCATGCTCTGCGGCGAGCTCTAC 
CAACTGGTGCGGATGTACCGCATCCAGTACTCGACCACACCGAACCGGCCGCGCCAGGCCTTCGCCGAACAC 
CACCGCATTCTCGACGCCATCGCCGACCGTGACGGCGAACTGGCCGAGCTGCTGATGCGCCGCCACATCAGT 
GCGTCGCGCCGCAATATCGAGCGCCAGCTGGAACCCCAGCCGGCGAAGCTCGCCTCCGCTTCCTCCACCGTC 
TAA