ViewGene
Locus Name:
GeneID:
Location:

GeneID:3356
TrivialName: PA14_57930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57930
PAO1 Ortholog Locus:PA4461
Sequence Length:726
Protein Length:241
Start: 5155510
Stop: 5156235
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07849.1|AE004860_5 (AE004860) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 241/241 (100%), Positives = 241/241 (100%)
Sequence:
ATGGCAACGCTCAAAGCCCAGCACCTGGCCAAAAGCTATAAAGGCCGGCAAGTCGTCCGCGACGTCAGCATG
TCCATCGATAGCGGGCAGATCGTCGGCCTGCTCGGTCCGAACGGTGCCGGCAAGACCACCTGCTTCTACATG
ATCGTCGGCCTGGTCCAGGCCGACCAGGGCGTGGTCCGCATCGACGAGCAGAACGTCACCCACCTACCGATG
CACGGGCGCGCCCGGGCCGGCATCGGCTACCTGCCGCAGGAAGCCTCGATCTTCCGCAAGCTGTCGGTATCC
GACAACATCATGGCGATCCTCGAGACCCGCAGCGACCTCGATCGCAACGGTCGCAAGGAAGCCCTGGAAGGC
CTGCTGCAGGAATTCCACATCCACCACATCCGCGACAACCTCGGCATGAGCCTGTCCGGCGGCGAACGACGC
CGGGTGGAAATCGCCCGCGCCCTGGCCAGCGCGCCGAAATTCATCCTCCTCGACGAGCCCTTCGCCGGCGTG
GACCCGATCTCGGTCGGCGACATCAAGCAGATCATCCATCACCTCAAGGCGAAGGGTATCGGCATCCTCATC
ACCGACCACAACGTCCGCGAGACCCTGGACATCTGTGAAACGGCGTATATCGTCAATGATGGGCAGTTGATC
GCGGAGGGGGATGCCGAGAGCATCCTCGCCAACGACCTGGTCAAGGAAGTCTACCTGGGGCACGAGTTCCGC
CTCTGA
Translation:
MATLKAQHLAKSYKGRQVVRDVSMSIDSGQIVGLLGPNGAGKTTCFYMIVGLVQADQGVVRIDEQNVTHLPM
HGRARAGIGYLPQEASIFRKLSVSDNIMAILETRSDLDRNGRKEALEGLLQEFHIHHIRDNLGMSLSGGERR
RVEIARALASAPKFILLDEPFAGVDPISVGDIKQIIHHLKAKGIGILITDHNVRETLDICETAYIVNDGQLI
AEGDAESILANDLVKEVYLGHEFRL*
AnnotationID:3364GeneID:3356
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 07:07:58
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA4461
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1137,COG0410,COG0411
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66578.1|AE016286_2 (AE016777) ABC transporter, ATP-binding protein, putative
           [Pseudomonas putida KT2440]
          Length = 241

 Score =  434 bits (1117), Expect = e-121
 Identities = 219/241 (90%), Positives = 232/241 (96%)

>gb|AAO57901.1| (AE016872) ABC transporter, ATP-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 241

 Score =  426 bits (1096), Expect = e-119
 Identities = 215/241 (89%), Positives = 228/241 (94%)

>gb|AAN82401.1|AE016767_161 (AE016767) Probable ABC transporter ATP-binding protein yhbG
           [Escherichia coli CFT073]
          Length = 241

 Score =  326 bits (835), Expect = 8e-89
 Identities = 160/241 (66%), Positives = 198/241 (82%)







 
Structural Features:
COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component 
CD-Length = 243 residues,  99.6% aligned
Score =  396 bits (1020), Expect = 2e-111
Identities = 166/242 (68%), Positives = 204/242 (84%), Gaps = 1/242 (0%)

COG0410, LivF, ABC-type branched-chain amino acid transport systems, 
ATPase component 
[Amino acid transport and metabolism]
CD-Length = 237 residues,  99.6% aligned
Score =  199 bits (507), Expect = 6e-52
Identities = 90/238 (37%), Positives = 143/238 (60%), Gaps = 4/238 (1%)

COG0411, LivG, ABC-type branched-chain amino acid transport systems, 
ATPase component 
[Amino acid transport and metabolism]
CD-Length = 250 residues,  98.0% aligned
Score =  196 bits (499), Expect = 6e-51
Identities = 90/245 (36%), Positives = 139/245 (56%), Gaps = 12/245 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6715




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23857




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31500




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3356_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3356
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5381
                           PA4461_tr
                           translation of PA4461
                           241
                           99.99
                           99.99
                           0
                           1219.0
     

     
     
150415
                           gb|AAG07849.1|AE004860_5
                           (AE004860) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           241
                           99.99
                           99.99
                           0
                           1219.0
     

     
     
150416
                           emb|CAD43111.1|
                           (AJ496594) hypothetical protein [Pseudomonas stutzeri]
                           241
                           90.87
                           96.26
                           0
                           1121.0
     

     
     
150417
                           gb|AAN66578.1|AE016286_2
                           (AE016777) ABC transporter, ATP-binding protein, putative [Pseudomonas putida KT2440]
                           241
                           90.87
                           96.26
                           0
                           1117.0
     

     
     
150418
                           emb|CAA11111.1|
                           (AJ223088) hypothetical protein [Pseudomonas stutzeri]
                           241
                           89.62
                           96.26
                           0
                           1110.0
     

     






      

          
GC ORFID: 46358How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4461Glimmer Score: 

          
Start: 4419189Stop: 4419914

          
Length: 726


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4461 translation of PA4461Homolog Bit Score 474.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5546 (ORF: BLASTX 426.0), t_PA4461 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAACGCTCAAAGCCCAGCACCTGGCCAAAAGCTATAAAGGCCGGCAAGTCGTCCGCGACGTCAGCATG 
TCCATCGATAGCGGGCAGATCGTCGGCCTGCTCGGTCCGAACGGTGCCGGCAAGACCACCTGCTTCTACATG 
ATCGTCGGCCTGGTCCAGGCCGACCAGGGCGTGGTCCGCATCGACGAGCAGAACGTCACCCACCTACCGATG 
CACGGGCGCGCCCGGGCCGGCATCGGCTACCTGCCGCAGGAAGCCTCGATCTTCCGCAAGCTGTCGGTATCC 
GACAACATCATGGCGATCCTCGAGACCCGCAGCGACCTCGATCGCAACGGTCGCAAGGAAGCCCTGGAAGGC 
CTGCTGCAGGAATTCCACATCCACCACATCCGCGACAACCTCGGCATGAGCCTGTCCGGCGGCGAACGACGC 
CGGGTGGAAATCGCCCGCGCCCTGGCCAGCGCGCCGAAATTCATCCTCCTCGACGAGCCCTTCGCCGGCGTG 
GACCCGATCTCGGTCGGCGACATCAAGCAGATCATCCATCACCTCAAGGCGAAGGGTATCGGCATCCTCATC 
ACCGACCACAACGTCCGCGAGACCCTGGACATCTGTGAAACGGCGTATATCGTCAATGATGGGCAGTTGATC 
GCGGAGGGGGATGCCGAGAGCATCCTCGCCAACGACCTGGTCAAGGAAGTCTACCTGGGGCACGAGTTCCGC 
CTCTGA