ViewGene

Locus Name:
GeneID:
Location:

GeneID:3355
TrivialName: PA14_55760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55760
PAO1 Ortholog Locus:PA4291
Sequence Length:687
Protein Length:228
Start: 4977658
Stop: 4978344
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07679.1|AE004845_5 (AE004845) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 228/228 (100%), Positives = 228/228 (100%)
Sequence:
ATGAGTAAATCTCCGGCCTCCGGGGCGTTGCGTCATGACCCTGGGGTCGGACGGGCGACGGCGGGGCTTCTT
TATTTGACTTGTAGTCCGGTTTGTAGCCCGCCCCCGGAAGCGCCGCCATCGTTCCTTAGTGGTATGGCCAAT
GGCTGGCATTCGACTAGCGCAGGCCGCGACGAAAGGCGGAGAACGCCCCGGACGCGTCGGCCAGGCCTTGAT
CCATGGGGACTTCGCCGCATTTCCAGGGGTCGCTCGAAGAACTTCCGTCCTGCCGTCCGTCGGCCGACACCG
TATGACAAGCCCGGAGCCCACGTTATAATTCCGCGCCCATTTACAGCCGGTAGCGGTCGACTAGACTCCCAA
CCGGCGCTGGCCGGACCCCGCTTCCGCCCAGCCTGGTCGCTATCGGGCCCGCTCTTTTTGGACTCAGGACCA
CCCGTGACGAAAGACGAATTGCGTGCCGCGCTGGCGCGCGAGGAACAGCGTTACAAGGACGTGTACGGCGGC
GAAGTGACGCTTTATGCCGCCCAGCCGGAACCCGACCGCAAGCCCTGGCGCAAACGCCCAACCGTTCAGGAG
CAGGCGTTCGACAGAGAACTGCAGAAGATCGAAGAAGAGCGTCTCAAGGCCGGGCAGGAAGCAGCGAACCCC
ATTCCATTTACCTCCAACCGACAGGAGAGCGACGGATAA
Translation:
MSKSPASGALRHDPGVGRATAGLLYLTCSPVCSPPPEAPPSFLSGMANGWHSTSAGRDERRRTPRTRRPGLD
PWGLRRISRGRSKNFRPAVRRPTPYDKPGAHVIIPRPFTAGSGRLDSQPALAGPRFRPAWSLSGPLFLDSGP
PVTKDELRAALAREEQRYKDVYGGEVTLYAAQPEPDRKPWRKRPTVQEQAFDRELQKIEEERLKAGQEAANP
IPFTSNRQESDG*
AnnotationID:3363GeneID:3355
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 07:07:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4291
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:6713
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23855
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3355

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5380 PA4291_tr translation of PA4291 228 99.99 99.99 0 1221.0
150414 gb|AAG07679.1|AE004845_5 (AE004845) hypothetical protein PA4291 [Pseudomonas aeruginosa PAO1] 228 99.99 99.99 0 1221.0
GC ORFID: 46357How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4291Glimmer Score:
Start: 4241334Stop: 4242020
Length: 687
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4291 translation of PA4291Homolog Bit Score 474.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6183 (ORF: BLASTX 101.0), t_PA4291 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTAAATCTCCGGCCTCCGGGGCGTTGCGTCATGACCCTGGGGTCGGACGGGCGACGGCGGGGCTTCTT
TATTTGACTTGTAGTCCGGTTTGTAGCCCGCCCCCGGAAGCGCCGCCATCGTTCCTTAGTGGTATGGCCAAT
GGCTGGCATTCGACTAGCGCAGGCCGCGACGAAAGGCGGAGAACGCCCCGGACGCGTCGGCCAGGCCTTGAT
CCATGGGGACTTCGCCGCATTTCCAGGGGTCGCTCGAAGAACTTCCGTCCTGCCGTCCGTCGGCCGACACCG
TATGACAAGCCCGGAGCCCACGTTATAATTCCGCGCCCATTTACAGCCGGTAGCGGTCGACTAGACTCCCAA
CCGGCGCTGGCCGGACCCCGCTTCCGCCCAGCCTGGTCGCTATCGGGCCCGCTCTTTTTGGACTCAGGACCA
CCCGTGACGAAAGACGAATTGCGTGCCGCGCTGGCGCGCGAGGAACAGCGTTACAAGGACGTGTACGGCGGC
GAAGTGACGCTTTATGCCGCCCAGCCGGAACCCGACCGCAAGCCCTGGCGCAAACGCCCAACCGTTCAGGAG
CAGGCGTTCGACAGAGAACTGCAGAAGATCGAAGAAGAGCGTCTCAAGGCCGGGCAGGAAGCAGCGAACCCC
ATTCCATTTACCTCCAACCGACAGGAGAGCGACGGATAA