ViewGene
Locus Name:
GeneID:
Location:

GeneID:3354
TrivialName: PA14_09810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09810
PAO1 Ortholog Locus:PA4181
Sequence Length:720
Protein Length:239
Start: 844483
Stop: 843764
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07568.1|AE004834_8 (AE004834) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 235/239 (98%), Positives = 237/239 (99%)
Sequence:
ATGCCCGAGCACGCCCCGATCCTCCCCGTCATCGCCGCCGAGGTGGCCGCCCTCGCCCCCGGTTTCCGCGCC
CTGAGCCTCACCGTCGAGGCGGCGCCGATCGTTCGTCCGGAAATCGCCGGCCGCGCCATGGAGCGCGCCTGC
CAGGCGCTGGCGCGTGGCGAACCGGACTGGGCCGAGGCGCACCTGGCAGCCTGGGCCGAGGCGTTCCGCCGC
TTCGGCGCCAAGCCGCAGCGTACCCCCTGCTCCGCCGAAGCCCTGCGCAAACGCGCGCTGCGCGACGGCGGG
CTGCCGAGCATCGACCCGGTGGTGGACCTGTACAACGCCATCAGCGTGCAATTCGCCATTCCGGTAGGCGGC
GAGAATCTCGCCGCCTATGCCGGCCCGCCGCGCCTGGTGGTCGCCGACGGCAGCGAGACCTTCGACACCCTG
AAGAACGGCGAGGCGGTCGACGAATCCCCCGACCCCGGCGAGGTGGTCTGGCGCGACGACCTCGGCGTCACC
TGCCGCCGCTGGAACTGGCGCCAGGGCGTGCGCACCCGCCTGGACGCCAGCGCCCGGCGCATGTGGTTCATC
CTCGAGAGCCTGCCGGAAATGCCGCTGGCGGCCCTGCACGAAGCGGGCGGCCTGCTGCTCGACGAATTGCGC
CTGATGATGCCCGGCATGCGCGCCGACTCGCGCCTGCTGTGCGTGGCGACGGTACCCGCCGACAGCGTATAA
Translation:
MPEHAPILPVIAAEVAALAPGFRALSLTVEAAPIVRPEIAGRAMERACQALARGEPDWAEAHLAAWAEAFRR
FGAKPQRTPCSAEALRKRALRDGGLPSIDPVVDLYNAISVQFAIPVGGENLAAYAGPPRLVVADGSETFDTL
KNGEAVDESPDPGEVVWRDDLGVTCRRWNWRQGVRTRLDASARRMWFILESLPEMPLAALHEAGGLLLDELR
LMMPGMRADSRLLCVATVPADSV*
AnnotationID:3362GeneID:3354
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 08:08:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4181
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL20583.1| (AE008773) putative cytoplasmic protein [Salmonella typhimurium
           LT2]
          Length = 228

 Score =  306 bits (784), Expect = 7e-83
 Identities = 144/225 (64%), Positives = 178/225 (79%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6711




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23853




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36897




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3354_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3354
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5379
                           PA4181_tr
                           translation of PA4181
                           239
                           98.32
                           99.16
                           0
                           1219.0
     

     
     
150407
                           gb|AAG07568.1|AE004834_8
                           (AE004834) hypothetical protein PA4181 [Pseudomonas aeruginosa PAO1]
                           239
                           98.32
                           99.16
                           0
                           1219.0
     

     
     
150408
                           gb|AAL20583.1|
                           (AE008773) putative cytoplasmic protein [Salmonella typhimurium LT2]
                           239
                           60.25
                           74.89
                           11
                           782.0
     

     
     
150409
                           gb|AAO69200.1|
                           (AE016839) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           239
                           60.25
                           75.31
                           11
                           782.0
     

     
     
150410
                           emb|CAD01665.1|
                           (AL627270) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
                           239
                           60.25
                           75.31
                           11
                           782.0
     

     






      

          
GC ORFID: 46356How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4181Glimmer Score: 

          
Start: 4109454Stop: 4110173

          
Length: 720


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4181 translation of PA4181Homolog Bit Score 474.0

          
Other Homologs:  t_PA4181 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGAGCACGCCCCGATCCTCCCCGTCATCGCCGCCGAGGTGGCCGCCCTCGCCCCCGGTTTCCGCGCC 
CTGAGCCTCACCGTCGAGGCGGCGCCGATCGTTCGTCCGGAAATCGCCGGCCGCGCCATGGAGCGCGCCTGC 
CAGGCGCTGGCGCGTGGCGAACCGGACTGGGCCGAGGCGCACCTGGCAGCCTGGGCCGAGGCGTTCCGCCGC 
TTCGGCGCCAAGCCGCAGCGTACCCCCTGCTCCGCCGAAGCCCTGCGCAAACGCGCGCTGCGCGACGGCGGG 
CTGCCGAGCATCGACCCGGTGGTGGACCTGTACAACGCCATCAGCGTGCAATTCGCCATTCCGGTAGGCGGC 
GAGAATCTCGCCGCCTATGCCGGCCCGCCGCGCCTGGTGGTCGCCGACGGCAGCGAGACCTTCGACACCCTG 
AAGAACGGCGAGGCGGTCGACGAATCCCCCGACCCCGGCGAGGTGGTCTGGCGCGACGACCTCGGCGTCACC 
TGCCGCCGCTGGAACTGGCGCCAGGGCGTGCGCACCCGCCTGGACGCCAGCGCCCGGCGCATGTGGTTCATC 
CTCGAGAGCCTGCCGGAAATGCCGCTGGCGGCCCTGCACGAAGCGGGCGGCCTGCTGCTCGACGAATTGCGC 
CTGATGATGCCCGGCATGCGCGCCGACTCGCGCCTGCTGTGCGTGGCGACGGTACCCGCCGACAGCGTATAA