ViewGene
Locus Name:
GeneID:
Location:

GeneID:3353
TrivialName: PA14_56990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56990
PAO1 Ortholog Locus:PA4384
Sequence Length:687
Protein Length:228
Start: 5078292
Stop: 5078978
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07772.1|AE004854_8 (AE004854) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 223/227 (98%), Positives = 226/227 (99%)
Sequence:
ATGCGCCCAGCCCTGCTGCTTTGCTGCCTGTTCCTGTCCGCCACCGCCCAGGCCGAGGATTGCTCGCCGCAA
ACCTCTGTCGGTAGCTGGTGCGAGCTGCCGCTCGCGGCTCTCCACCCGACCCAGCAGAATGTCGGCCTGCTG
CAGGTCGAGGATGACCAGGCCAAGCTCGCCGGGAAGAAGCCCAAGGCTCTCGAGCGCTACTTGCGCAAGAAG
GAGATTCCGGTGGTGATCGGCCCCGGCGGCCGCTTCTACCTCACCGATCGCCATCACCTGAGTAGCGCGCTC
TGGCGCCTGGACCCGAAACAGGGCGTACCGGTGAAGGTGATCGGCCGACTACCCCAGGCCACCGACTTCTGG
AAGAAGATGCAGGAAAACCACTGGGTCTGGCTGCACGATGCGCGTGGCGCGGAGATCCCGCCCGAGGCGCTG
CCGGACGCTCTCGCCGGGCTTGGCGACGATCCCTACCGCGCCCTGGCCGGCTACGCCGAGGACGAGAACGCC
TTCGACAAGGATCGGCAGAGCTATTTCATCGAATTCCACTGGGCGCGCTATTTCGGCGAACGCATGCACTGG
CGGCCGATCAGCCGCGCCACTCTGCCCGACGACCTGAAGCAGGCGCTGCGCCTGGCCTGCGAACCGGCGGCA
AAGGAGCTGCCGGGCTACCGCCAGGACTGCCCGCGCTGA
Translation:
MRPALLLCCLFLSATAQAEDCSPQTSVGSWCELPLAALHPTQQNVGLLQVEDDQAKLAGKKPKALERYLRKK
EIPVVIGPGGRFYLTDRHHLSSALWRLDPKQGVPVKVIGRLPQATDFWKKMQENHWVWLHDARGAEIPPEAL
PDALAGLGDDPYRALAGYAEDENAFDKDRQSYFIEFHWARYFGERMHWRPISRATLPDDLKQALRLACEPAA
KELPGYRQDCPR*
AnnotationID:3361GeneID:3353
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 10:10:29
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4384
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6709




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17141




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3353_cdd.html


    		




 
URL:

















    ReferenceID:23851




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3353
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5378
                           PA4384_tr
                           translation of PA4384
                           228
                           97.80
                           99.12
                           0
                           1222.0
     

     
     
150406
                           gb|AAG07772.1|AE004854_8
                           (AE004854) hypothetical protein PA4384 [Pseudomonas aeruginosa PAO1]
                           228
                           97.80
                           99.12
                           0
                           1222.0
     

     






      

          
GC ORFID: 46355How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4384Glimmer Score: 

          
Start: 4341968Stop: 4342654

          
Length: 687


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4384 translation of PA4384Homolog Bit Score 475.0

          
Other Homologs:  t_PA4384 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCCAGCCCTGCTGCTTTGCTGCCTGTTCCTGTCCGCCACCGCCCAGGCCGAGGATTGCTCGCCGCAA 
ACCTCTGTCGGTAGCTGGTGCGAGCTGCCGCTCGCGGCTCTCCACCCGACCCAGCAGAATGTCGGCCTGCTG 
CAGGTCGAGGATGACCAGGCCAAGCTCGCCGGGAAGAAGCCCAAGGCTCTCGAGCGCTACTTGCGCAAGAAG 
GAGATTCCGGTGGTGATCGGCCCCGGCGGCCGCTTCTACCTCACCGATCGCCATCACCTGAGTAGCGCGCTC 
TGGCGCCTGGACCCGAAACAGGGCGTACCGGTGAAGGTGATCGGCCGACTACCCCAGGCCACCGACTTCTGG 
AAGAAGATGCAGGAAAACCACTGGGTCTGGCTGCACGATGCGCGTGGCGCGGAGATCCCGCCCGAGGCGCTG 
CCGGACGCTCTCGCCGGGCTTGGCGACGATCCCTACCGCGCCCTGGCCGGCTACGCCGAGGACGAGAACGCC 
TTCGACAAGGATCGGCAGAGCTATTTCATCGAATTCCACTGGGCGCGCTATTTCGGCGAACGCATGCACTGG 
CGGCCGATCAGCCGCGCCACTCTGCCCGACGACCTGAAGCAGGCGCTGCGCCTGGCCTGCGAACCGGCGGCA 
AAGGAGCTGCCGGGCTACCGCCAGGACTGCCCGCGCTGA