ViewGene
Locus Name:
GeneID:
Location:

GeneID:3352
TrivialName: PA14_55850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55850
PAO1 Ortholog Locus:PA4299
Sequence Length:738
Protein Length:245
Start: 4987569
Stop: 4986832
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07687.1|AE004846_4 (AE004846) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 243/244 (99%), Positives = 243/244 (99%)
Sequence:
ATGAAAGCACTGATCGGCATCGGCCTGTGCGCCGCCCTGCTCGGTGGTTGCGCCGCGCTGCCGGGGCGGGAC
GGCCCACGGGAGTGTTCGCAGCAGCTTGGCCAGGAGCAGGAACTGCAGATGAACATGGTCCGCGACATGATC
CGCGAGGGCCGCCTGCATGCGGCCCTGGCCAACCTGGAAAGCATGCCGCCGGGGTTGCTCGACGTGCGCGAG
GAAAGGGCGCTGATCCTGCGCCGGATCGGCGACCCGCGGGCCAGGGCCGAGTACCAGGCCCTACTGGAAACC
TGCAAGGCAGCCGAGGCGCACCACGGCCTCGGCCTGCTCGCCCTGCGCAATGGCGACAGCGCCCGGGCGGTC
CTCGAGCTGCGCGAGGCGGCGCGCCTGCGGCCGACCGAGAGCCGCTTCCGCAACGACCTGGGGGTCGCCCTG
CTCAAGCGCGGCGACCGTGTCGGCGCGCGCTTCGAATTCATCACTGCGCTGGAGTTGCAGCAGGGCGGCAAG
CTACCGGCGACCAACCTGCTCGGCCTGCTGTACCTGCAAGGCGACCGGGAAGATGCGCAGCGCCTGATCGAG
CGTTTGCAGCTGGATGCCCGGGACATCCGCGCGGCCGAGGCGCGGGCGCGCAGCTGGGGTGCCGTACCGACA
CCCGGCGCGGCGCCGGCAAGCGACGACCCGCTGGCGGAACTGCCGGCGGAGGCGAATATGCATACCGCGATG
GCCAACGAGGCGTCCTGA
Translation:
MKALIGIGLCAALLGGCAALPGRDGPRECSQQLGQEQELQMNMVRDMIREGRLHAALANLESMPPGLLDVRE
ERALILRRIGDPRARAEYQALLETCKAAEAHHGLGLLALRNGDSARAVLELREAARLRPTESRFRNDLGVAL
LKRGDRVGARFEFITALELQQGGKLPATNLLGLLYLQGDREDAQRLIERLQLDARDIRAAEARARSWGAVPT
PGAAPASDDPLAELPAEANMHTAMANEAS*
AnnotationID:3360GeneID:3352
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 07:07:43
Gene Name:
Confidence Code:3
GeneProduct:putative pilus assembly protein
Cell Localization:()
Synonyms:PA4299
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5010
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats 
[Intracellular trafficking and secretion]
CD-Length = 257 residues,  94.9% aligned
Score =  175 bits (446), Expect = 3e-45
Identities = 72/244 (29%), Positives = 92/244 (37%), Gaps = 2/244 (0%)








   
Genomic Context:






   
Comment:


















    ReferenceID:6707




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23849




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36661




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3352_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3352
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5377
                           PA4299_tr
                           translation of PA4299
                           245
                           99.18
                           99.18
                           0
                           1222.0
     

     
     
150404
                           gb|AAG07687.1|AE004846_4
                           (AE004846) hypothetical protein PA4299 [Pseudomonas aeruginosa PAO1]
                           245
                           99.18
                           99.18
                           0
                           1222.0
     

     
     
150405
                           gb|AAO58285.1|
                           (AE016873) TPR domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           266
                           39.84
                           50.75
                           37
                           396.0
     

     






      

          
GC ORFID: 46354How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4299Glimmer Score: 

          
Start: 4251245Stop: 4250508

          
Length: 738


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4299 translation of PA4299Homolog Bit Score 475.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5765 (ORF: BLASTX 158.0), t_PA4299 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCACTGATCGGCATCGGCCTGTGCGCCGCCCTGCTCGGTGGTTGCGCCGCGCTGCCGGGGCGGGAC 
GGCCCACGGGAGTGTTCGCAGCAGCTTGGCCAGGAGCAGGAACTGCAGATGAACATGGTCCGCGACATGATC 
CGCGAGGGCCGCCTGCATGCGGCCCTGGCCAACCTGGAAAGCATGCCGCCGGGGTTGCTCGACGTGCGCGAG 
GAAAGGGCGCTGATCCTGCGCCGGATCGGCGACCCGCGGGCCAGGGCCGAGTACCAGGCCCTACTGGAAACC 
TGCAAGGCAGCCGAGGCGCACCACGGCCTCGGCCTGCTCGCCCTGCGCAATGGCGACAGCGCCCGGGCGGTC 
CTCGAGCTGCGCGAGGCGGCGCGCCTGCGGCCGACCGAGAGCCGCTTCCGCAACGACCTGGGGGTCGCCCTG 
CTCAAGCGCGGCGACCGTGTCGGCGCGCGCTTCGAATTCATCACTGCGCTGGAGTTGCAGCAGGGCGGCAAG 
CTACCGGCGACCAACCTGCTCGGCCTGCTGTACCTGCAAGGCGACCGGGAAGATGCGCAGCGCCTGATCGAG 
CGTTTGCAGCTGGATGCCCGGGACATCCGCGCGGCCGAGGCGCGGGCGCGCAGCTGGGGTGCCGTACCGACA 
CCCGGCGCGGCGCCGGCAAGCGACGACCCGCTGGCGGAACTGCCGGCGGAGGCGAATATGCATACCGCGATG 
GCCAACGAGGCGTCCTGA