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ViewGene |
Locus Name:
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GeneID: |
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Location: |
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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG06580.1|AE004743_3 (AE004743) two-component response regulator GltR [Pseudomonas aeruginosa PAO1]
Identities = 242/242 (100%), Positives = 242/242 (100%)
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Sequence:
GTGAGCGCGAACGGACGATCGATCCTGCTGGTGGACGATGACCAGGAGATCCGCGAATTGCTGGAGACCTAC
CTGAGCCGCGCCGGCTTCCAGGTCCGCAGCGTCTCGCGGGGCGCCGACTTCCGCCAGGCGCTGTGCGAGGAG
GAGGCGAGCCTGGCGATCCTCGACGTGATGCTGCCGGACGAGGACGGCTTCAGCCTCTGTCGCTGGATTCGC
TCCCACCAGCGCCTGGCCTGCATGCCGATCATTATGCTCACCGCCAGTTCCGACGAGGCCGACCGGGTGATC
GGCCTGGAACTGGGCGCCGACGACTACCTGGGCAAGCCGTTCAGCCCGCGCGAGCTGCTGGCGCGGATCAAG
GCCCTGCTGCGCCGCGCGCAGTTCACCCAGGTGCGCGGTGGCGACGTACTGGCCTTCGAGGACTGGCGACTG
GATACGGTCAGCCACCGGCTGTTCCACGAGGACGGCGAGGAGTTCTTCCTCAGCGGCGCGGATTTCGCCCTG
CTCAAGCTGTTCCTCGACCATCCGCAGCAGATCCTCGACCGCGACACCATCGCCAACGCCACCCGCGGCCGC
GAGGTGCTGCCGCTGGAGCGCATCGTCGACATGGCGGTCAGCCGCCTGCGCCAGCGCCTGCGCGACACCGGC
AAGGCGCCGCGGCTGATCCAGACCGTGCGCGGCAGTGGCTACCTGCTGGCGGCGCAGGTGCGGCCGCACCTG
CAGCCATGA |
Translation:
MSANGRSILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEASLAILDVMLPDEDGFSLCRWIR
SHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRRAQFTQVRGGDVLAFEDWRL
DTVSHRLFHEDGEEFFLSGADFALLKLFLDHPQQILDRDTIANATRGREVLPLERIVDMAVSRLRQRLRDTG
KAPRLIQTVRGSGYLLAAQVRPHLQP* |
AnnotationID:3359 | GeneID:3351 |
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Modification Date/Time: |
2005-04-14 07:07:20 |
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GeneProduct: | two-component response regulator GltR |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (28) Two-component regulatory systems |
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Alternate Gene Product Name: | DNA-binding response regulator |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | transcriptional regulator |
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Homology: | >gb|AAO54814.1| (AE016860) DNA-binding response regulator [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 245
Score = 380 bits (975), Expect = e-105
Identities = 195/240 (81%), Positives = 212/240 (88%), Gaps = 1/240 (0%)
>gb|AAN66637.1|AE016291_6 (AE016777) DNA-binding response regulator GltR [Pseudomonas putida
KT2440]
Length = 241
Score = 365 bits (936), Expect = e-100
Identities = 189/237 (79%), Positives = 203/237 (85%), Gaps = 1/237 (0%)
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Structural Features: | COG0745, OmpR, Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription]
CD-Length = 229 residues, 98.7% aligned
Score = 207 bits (527), Expect = 1e-54
Identities = 104/229 (45%), Positives = 143/229 (62%), Gaps = 4/229 (1%) |
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Homologs By Global Alignment |
Gene ID:3351 |
Identity: |
0% |
10% |
20% |
30% |
40% |
50% |
60% |
70% |
80% |
90% |
100% |
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HomologID |
Accession |
Description |
Length |
PctIdentity |
PctSimilarity |
Gaps |
Score |
5371 |
PA3192_tr |
translation of PA3192 |
242 |
99.99 |
99.99 |
0 |
1223.0 |
150289 |
gb|AAC44475.1| |
(U50932) GltR [Pseudomonas aeruginosa] |
242 |
99.58 |
99.99 |
0 |
1220.0 |
150288 |
gb|AAG06580.1|AE004743_3 |
(AE004743) two-component response regulator GltR [Pseudomonas aeruginosa PAO1] |
242 |
99.58 |
99.99 |
0 |
1220.0 |
150290 |
gb|AAO54814.1| |
(AE016860) DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] |
245 |
79.18 |
86.53 |
3 |
970.0 |
150291 |
gb|AAN66637.1|AE016291_6 |
(AE016777) DNA-binding response regulator GltR [Pseudomonas putida KT2440] |
245 |
77.14 |
83.26 |
7 |
929.0 |
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GC ORFID: 46353 | How Found: BLASTX |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: t_PA3192 | Glimmer Score: |
Start: 2964323 | Stop: 2963595 |
Length: 729 | |
Start Codon: GTG | Truncated Start: |
Stop Codon: TGA | Truncated Stop: |
Homolog: t_PA3192 translation of PA3192 | Homolog Bit Score 475.0 |
Other Homologs: psyr_15may02_Scaffold3_revised_gene4416 (ORF: BLASTX 376.0), t_PA4101 (ORF: BLASTX 211.0), t_PA5200 (ORF: BLASTX 183.0), psyr_15may02_Scaffold2_revised_gene3175 (ORF: BLASTX 172.0), t_PA4983 (ORF: BLASTX 167.0), t_PA1157 (ORF: BLASTX 154.0), psyr_15may02_Scaffold5_revised_gene6430 (ORF: BLASTX 152.0), t_PA1799 (ORF: BLASTX 149.0), t_PA3192 (ORF: GLIMMER) |
GC ORF Sequence |
GTGAGCGCGAACGGACGATCGATCCTGCTGGTGGACGATGACCAGGAGATCCGCGAATTGCTGGAGACCTAC CTGAGCCGCGCCGGCTTCCAGGTCCGCAGCGTCTCGCGGGGCGCCGACTTCCGCCAGGCGCTGTGCGAGGAG GAGGCGAGCCTGGCGATCCTCGACGTGATGCTGCCGGACGAGGACGGCTTCAGCCTCTGTCGCTGGATTCGC TCCCACCAGCGCCTGGCCTGCATGCCGATCATTATGCTCACCGCCAGTTCCGACGAGGCCGACCGGGTGATC GGCCTGGAACTGGGCGCCGACGACTACCTGGGCAAGCCGTTCAGCCCGCGCGAGCTGCTGGCGCGGATCAAG GCCCTGCTGCGCCGCGCGCAGTTCACCCAGGTGCGCGGTGGCGACGTACTGGCCTTCGAGGACTGGCGACTG GATACGGTCAGCCACCGGCTGTTCCACGAGGACGGCGAGGAGTTCTTCCTCAGCGGCGCGGATTTCGCCCTG CTCAAGCTGTTCCTCGACCATCCGCAGCAGATCCTCGACCGCGACACCATCGCCAACGCCACCCGCGGCCGC GAGGTGCTGCCGCTGGAGCGCATCGTCGACATGGCGGTCAGCCGCCTGCGCCAGCGCCTGCGCGACACCGGC AAGGCGCCGCGGCTGATCCAGACCGTGCGCGGCAGTGGCTACCTGCTGGCGGCGCAGGTGCGGCCGCACCTG CAGCCATGA |
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