ViewGene

Locus Name:
GeneID:
Location:

GeneID:3351
TrivialName: PA14_22940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22940
PAO1 Ortholog Locus:PA3192
Sequence Length:729
Protein Length:242
Start: 1989608
Stop: 1990336
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06580.1|AE004743_3 (AE004743) two-component response regulator GltR [Pseudomonas aeruginosa PAO1]
Identities = 242/242 (100%), Positives = 242/242 (100%)
Sequence:
GTGAGCGCGAACGGACGATCGATCCTGCTGGTGGACGATGACCAGGAGATCCGCGAATTGCTGGAGACCTAC
CTGAGCCGCGCCGGCTTCCAGGTCCGCAGCGTCTCGCGGGGCGCCGACTTCCGCCAGGCGCTGTGCGAGGAG
GAGGCGAGCCTGGCGATCCTCGACGTGATGCTGCCGGACGAGGACGGCTTCAGCCTCTGTCGCTGGATTCGC
TCCCACCAGCGCCTGGCCTGCATGCCGATCATTATGCTCACCGCCAGTTCCGACGAGGCCGACCGGGTGATC
GGCCTGGAACTGGGCGCCGACGACTACCTGGGCAAGCCGTTCAGCCCGCGCGAGCTGCTGGCGCGGATCAAG
GCCCTGCTGCGCCGCGCGCAGTTCACCCAGGTGCGCGGTGGCGACGTACTGGCCTTCGAGGACTGGCGACTG
GATACGGTCAGCCACCGGCTGTTCCACGAGGACGGCGAGGAGTTCTTCCTCAGCGGCGCGGATTTCGCCCTG
CTCAAGCTGTTCCTCGACCATCCGCAGCAGATCCTCGACCGCGACACCATCGCCAACGCCACCCGCGGCCGC
GAGGTGCTGCCGCTGGAGCGCATCGTCGACATGGCGGTCAGCCGCCTGCGCCAGCGCCTGCGCGACACCGGC
AAGGCGCCGCGGCTGATCCAGACCGTGCGCGGCAGTGGCTACCTGCTGGCGGCGCAGGTGCGGCCGCACCTG
CAGCCATGA
Translation:
MSANGRSILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEASLAILDVMLPDEDGFSLCRWIR
SHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRRAQFTQVRGGDVLAFEDWRL
DTVSHRLFHEDGEEFFLSGADFALLKLFLDHPQQILDRDTIANATRGREVLPLERIVDMAVSRLRQRLRDTG
KAPRLIQTVRGSGYLLAAQVRPHLQP*
AnnotationID:3359GeneID:3351
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 07:07:20
Gene Name:gltR
Confidence Code:1
GeneProduct:two-component response regulator GltR
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:DNA-binding response regulator
Functional Category Confidence Code:5
COGs:COG0745
Secondary Functional Category(ies):transcriptional regulator
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54814.1| (AE016860) DNA-binding response regulator [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 245

 Score =  380 bits (975), Expect = e-105
 Identities = 195/240 (81%), Positives = 212/240 (88%), Gaps = 1/240 (0%)

>gb|AAN66637.1|AE016291_6 (AE016777) DNA-binding response regulator GltR [Pseudomonas putida
           KT2440]
          Length = 241

 Score =  365 bits (936), Expect = e-100
 Identities = 189/237 (79%), Positives = 203/237 (85%), Gaps = 1/237 (0%)

Structural Features:
COG0745, OmpR, Response regulators consisting of a CheY-like 
receiver domain and a winged-helix DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 229 residues,  98.7% aligned
Score =  207 bits (527), Expect = 1e-54
Identities = 104/229 (45%), Positives = 143/229 (62%), Gaps = 4/229 (1%)
Genomic Context:
Comment:
ReferenceID:14803
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23847
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32351
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3351_cdd.html
URL:
ReferenceID:33971
Author/Investigator(s): Sage AE, Proctor WD, Phibbs PV Jr.
Title: A two-component response regulator, gltR, is required for glucose transport activity in Pseudomonas aeruginosa PAO1.
PubMed: 8830708
MedLine:
Source:
J Bacteriol. 1996 Oct;178(20):6064-6.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8830708
Homologs By Global Alignment
Gene ID:3351

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5371 PA3192_tr translation of PA3192 242 99.99 99.99 0 1223.0
150289 gb|AAC44475.1| (U50932) GltR [Pseudomonas aeruginosa] 242 99.58 99.99 0 1220.0
150288 gb|AAG06580.1|AE004743_3 (AE004743) two-component response regulator GltR [Pseudomonas aeruginosa PAO1] 242 99.58 99.99 0 1220.0
150290 gb|AAO54814.1| (AE016860) DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] 245 79.18 86.53 3 970.0
150291 gb|AAN66637.1|AE016291_6 (AE016777) DNA-binding response regulator GltR [Pseudomonas putida KT2440] 245 77.14 83.26 7 929.0
GC ORFID: 46353How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3192Glimmer Score:
Start: 2964323Stop: 2963595
Length: 729
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3192 translation of PA3192Homolog Bit Score 475.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4416 (ORF: BLASTX 376.0), t_PA4101 (ORF: BLASTX 211.0), t_PA5200 (ORF: BLASTX 183.0), psyr_15may02_Scaffold2_revised_gene3175 (ORF: BLASTX 172.0), t_PA4983 (ORF: BLASTX 167.0), t_PA1157 (ORF: BLASTX 154.0), psyr_15may02_Scaffold5_revised_gene6430 (ORF: BLASTX 152.0), t_PA1799 (ORF: BLASTX 149.0), t_PA3192 (ORF: GLIMMER)
GC ORF Sequence
GTGAGCGCGAACGGACGATCGATCCTGCTGGTGGACGATGACCAGGAGATCCGCGAATTGCTGGAGACCTAC
CTGAGCCGCGCCGGCTTCCAGGTCCGCAGCGTCTCGCGGGGCGCCGACTTCCGCCAGGCGCTGTGCGAGGAG
GAGGCGAGCCTGGCGATCCTCGACGTGATGCTGCCGGACGAGGACGGCTTCAGCCTCTGTCGCTGGATTCGC
TCCCACCAGCGCCTGGCCTGCATGCCGATCATTATGCTCACCGCCAGTTCCGACGAGGCCGACCGGGTGATC
GGCCTGGAACTGGGCGCCGACGACTACCTGGGCAAGCCGTTCAGCCCGCGCGAGCTGCTGGCGCGGATCAAG
GCCCTGCTGCGCCGCGCGCAGTTCACCCAGGTGCGCGGTGGCGACGTACTGGCCTTCGAGGACTGGCGACTG
GATACGGTCAGCCACCGGCTGTTCCACGAGGACGGCGAGGAGTTCTTCCTCAGCGGCGCGGATTTCGCCCTG
CTCAAGCTGTTCCTCGACCATCCGCAGCAGATCCTCGACCGCGACACCATCGCCAACGCCACCCGCGGCCGC
GAGGTGCTGCCGCTGGAGCGCATCGTCGACATGGCGGTCAGCCGCCTGCGCCAGCGCCTGCGCGACACCGGC
AAGGCGCCGCGGCTGATCCAGACCGTGCGCGGCAGTGGCTACCTGCTGGCGGCGCAGGTGCGGCCGCACCTG
CAGCCATGA