ViewGene

Locus Name:
GeneID:
Location:

GeneID:3348
TrivialName: PA14_44490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44490
PAO1 Ortholog Locus:PA1544
Sequence Length:735
Protein Length:244
Start: 3961719
Stop: 3962453
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04933.1|AE004582_11 (AE004582) transcriptional regulator Anr [Pseudomonas aeruginosa PAO1]
Identities = 244/244 (100%), Positives = 244/244 (100%)
Sequence:
ATGGCCGAAACCATCAAGGTGCGCGCACTGCCCCAAGCACACTGCAAGGATTGCAGTCTGGCCCCGCTGTGC
CTCCCCCTGTCGCTGACCGTGGAAGACATGGATTCGCTGGACGAGATCGTCAAGCGCGGTCGTCCCCTGAAG
AAAGGCGAATTCCTGTTCCGCCAGGGCGATCCTTTCGGCTCGGTCTTTGCCGTGCGCTCCGGCGCCCTGAAA
ACCTTCAGCATCACCGATGCCGGCGAAGAGCAGATCACCGGCTTCCACCTGCCCAGCGAGCTGGTCGGCCTG
TCCGGGATGGATACCGAGACCTATCCGGTATCCGCCCAGGCCCTGGAAACCACCTCGGTCTGCGAGATTCCC
TTCGAGCGCCTGGACGAACTGTCCGAGCAGCTGCCGCAACTGCGCCGCCAACTGATGCGCCTGATGAGCCGG
GAAATCCGCGATGACCAGCAGATGATGCTGCTGCTGTCGAAGAAGACTGCCGACGAGCGCATCGCCACCTTC
CTGGTCAACCTGTCGGCGCGCTTCCGTGCCCGTGGCTTCTCCGCCCAGCAGTTCCGCCTGGCCATGTCGCGC
AACGAGATCGGCAACTATCTCGGCCTGGCCGTAGAAACCGTGTCGCGGGTCTTCACCCGCTTCCAGCAGAAC
GGCCTGATCAGCGCGGAAGGCAAGGAAGTGCACATCCTCGACTCCATCGAGCTGTGCGCCCTCGCCGGCGGC
CAGCTGGAAGGCTGA
Translation:
MAETIKVRALPQAHCKDCSLAPLCLPLSLTVEDMDSLDEIVKRGRPLKKGEFLFRQGDPFGSVFAVRSGALK
TFSITDAGEEQITGFHLPSELVGLSGMDTETYPVSAQALETTSVCEIPFERLDELSEQLPQLRRQLMRLMSR
EIRDDQQMMLLLSKKTADERIATFLVNLSARFRARGFSAQQFRLAMSRNEIGNYLGLAVETVSRVFTRFQQN
GLISAEGKEVHILDSIELCALAGGQLEG*
AnnotationID:3356GeneID:3348
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 09:09:07
Gene Name:anr
Confidence Code:1
GeneProduct:transcriptional regulator Anr
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:anaerobic regulatory protein
Functional Category Confidence Code:5
COGs:COG0664
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69845.1|AE016623_7 (AE016790) transcriptional regulator Anr [Pseudomonas putida
           KT2440]
          Length = 244

 Score =  426 bits (1096), Expect = e-119
 Identities = 215/243 (88%), Positives = 230/243 (94%)

>gb|AAO55509.1| (AE016862) transcriptional activator Anr [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 244

 Score =  415 bits (1066), Expect = e-115
 Identities = 209/243 (86%), Positives = 227/243 (93%)

>gb|AAG56466.1|AE005372_11 (AE005372) transcriptional regulation of aerobic, anaerobic
           respiration, osmotic balance [Escherichia coli O157:H7
           EDL933]
          Length = 250

 Score =  259 bits (663), Expect = 7e-69
 Identities = 121/226 (53%), Positives = 174/226 (76%)
Structural Features:
COG0664, Crp, cAMP-binding proteins - catabolite gene activator and 
regulatory subunit of cAMP-dependent protein kinases 
[Signal transduction mechanisms]
CD-Length = 214 residues,  98.6% aligned
Score =  143 bits (362), Expect = 1e-35
Identities = 71/212 (33%), Positives = 113/212 (53%), Gaps = 2/212 (0%)

Genomic Context:
Comment:
ReferenceID:6699
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23841
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37299
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3348_cdd.html
URL:
ReferenceID:37931
Author/Investigator(s): Rompf A, Hungerer C, Hoffmann T, Lindenmeyer M, Romling U, Gross U, Doss MO, Arai H, Igarashi Y, Jahn D.
Title: Regulation of Pseudomonas aeruginosa hemF and hemN by the dual action of the redox response regulators Anr and Dnr.
PubMed: 9767567
MedLine:
Source:
Mol Microbiol. 1998 Aug;29(4):985-97.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=99000506&dopt=Abstract
ReferenceID:37932
Author/Investigator(s): Zimmermann A, Reimmann C, Galimand M, Haas D.
Title: Anaerobic growth and cyanide synthesis of Pseudomonas aeruginosa depend on anr, a regulatory gene homologous with fnr of Escherichia coli.
PubMed: 1787798
MedLine:
Source:
Mol Microbiol. 1991 Jun;5(6):1483-90.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1787798
ReferenceID:37933
Author/Investigator(s): Sawers RG.
Title: Identification and molecular characterization of a transcriptional regulator from Pseudomonas aeruginosa PAO1 exhibiting structural and functional similarity to the FNR protein of Escherichia coli.
PubMed: 1787797
MedLine:
Source:
Mol Microbiol. 1991 Jun;5(6):1469-81.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1787797
Homologs By Global Alignment
Gene ID:3348

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5367 PA1544_tr translation of PA1544 244 99.99 99.99 0 1222.0
150176 gb|AAG04933.1|AE004582_11 (AE004582) transcriptional regulator Anr [Pseudomonas aeruginosa PAO1] 244 99.99 99.99 0 1222.0
150177 emb|CAA40906.1| (X57736) ANR protein [Pseudomonas aeruginosa] 244 99.99 99.99 0 1222.0
150178 emb|CAA41305.1| (X58405) transcriptional activator protein [Pseudomonas aeruginosa] 244 99.99 99.99 0 1222.0
150179 gb|AAA25713.1| (M98276) ANR [Pseudomonas aeruginosa] 244 99.99 99.99 0 1222.0
GC ORFID: 46350How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1544Glimmer Score:
Start: 992190Stop: 991456
Length: 735
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1544 translation of PA1544Homolog Bit Score 475.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7537 (ORF: BLASTX 419.0), t_PA1544 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCGAAACCATCAAGGTGCGCGCACTGCCCCAAGCACACTGCAAGGATTGCAGTCTGGCCCCGCTGTGC
CTCCCCCTGTCGCTGACCGTGGAAGACATGGATTCGCTGGACGAGATCGTCAAGCGCGGTCGTCCCCTGAAG
AAAGGCGAATTCCTGTTCCGCCAGGGCGATCCTTTCGGCTCGGTCTTTGCCGTGCGCTCCGGCGCCCTGAAA
ACCTTCAGCATCACCGATGCCGGCGAAGAGCAGATCACCGGCTTCCACCTGCCCAGCGAGCTGGTCGGCCTG
TCCGGGATGGATACCGAGACCTATCCGGTATCCGCCCAGGCCCTGGAAACCACCTCGGTCTGCGAGATTCCC
TTCGAGCGCCTGGACGAACTGTCCGAGCAGCTGCCGCAACTGCGCCGCCAACTGATGCGCCTGATGAGCCGG
GAAATCCGCGATGACCAGCAGATGATGCTGCTGCTGTCGAAGAAGACTGCCGACGAGCGCATCGCCACCTTC
CTGGTCAACCTGTCGGCGCGCTTCCGTGCCCGTGGCTTCTCCGCCCAGCAGTTCCGCCTGGCCATGTCGCGC
AACGAGATCGGCAACTATCTCGGCCTGGCCGTAGAAACCGTGTCGCGGGTCTTCACCCGCTTCCAGCAGAAC
GGCCTGATCAGCGCGGAAGGCAAGGAAGTGCACATCCTCGACTCCATCGAGCTGTGCGCCCTCGCCGGCGGC
CAGCTGGAAGGCTGA