ViewGene

Locus Name:
GeneID:
Location:

GeneID:3347
TrivialName: PA14_45560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45560
PAO1 Ortholog Locus:PA1460
Sequence Length:741
Protein Length:246
Start: 4053681
Stop: 4052941
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04849.1|AE004575_8 (AE004575) probable chemotaxis transmembrane proton channel [Pseudomonas aeruginosa PAO1]
Identities = 246/246 (100%), Positives = 246/246 (100%)
Sequence:
ATGGATGTGCTCAGCCTGGTCGGGATCATCCTGGCGTTCGTCGCCATCGTCGGCGGCAACTTCCTCGAGGGC
GGCCACGCGGGGGCCCTGCTCAACGGTCCGGCGGCGCTGATCGTGATCGGCGGCACCCTGGCCGCGGCGCTG
TTGCAGACCCCGGTGAACGTGCTCAAGCGCGGCCTGGGCATGCTCGGCTGGGTGTTCTTCCCGCCGCGCGAG
GATCTTTCCGGGGGAATCGACCGGATCGTCTCCTGGAGCATGACCGCGCGCAAGGAAGGCCTGCTCGGCCTG
GAGAGCATCGCCGACGCGGAGCCCGATCCCTATGCGCGCAAGGGCCTGCAACTGCTGGTGGACGGCGCCGAG
CCAGAAGTCATCCGCAGCATCCTCGAGGTCGACCTGTTCACCCAGGAAAGCCGCGACCTGCAGGCCGCCAAG
GTGTTCGAGAGCATGGGCGGCTATGCGCCGACCATCGGCATCATCGGCGCGGTAATGGGCCTGATCCATGTG
ATGGGCAACCTGGCCAACCCGGCGCAGCTCGGCAGCGGCATCGCCGTGGCCTTCGTCGCCACCATCTATGGC
GTCGGCTTCGCCAACCTGCTCCTGCTGCCGATCGGCAACAAGCTGAAAACCCTGGTGCTGCGCCAGTCGCGC
TACCGCGAGATGCTCCTGGAGGGCCTGCTGTCCATCGCCGAGGGCGAGAACCCGCGTTCCATCGAGTTGAAG
CTGCAAGGCTTCATGGACTGA
Translation:
MDVLSLVGIILAFVAIVGGNFLEGGHAGALLNGPAALIVIGGTLAAALLQTPVNVLKRGLGMLGWVFFPPRE
DLSGGIDRIVSWSMTARKEGLLGLESIADAEPDPYARKGLQLLVDGAEPEVIRSILEVDLFTQESRDLQAAK
VFESMGGYAPTIGIIGAVMGLIHVMGNLANPAQLGSGIAVAFVATIYGVGFANLLLLPIGNKLKTLVLRQSR
YREMLLEGLLSIAEGENPRSIELKLQGFMD*
AnnotationID:3355GeneID:3347
AnnotatorUID: danlee
Modification Date/Time: 2006-01-31 14:02:46
Gene Name:motC
Confidence Code:1
GeneProduct:chemotaxis protein MotC
Cell Localization:(4) Inner membrane protein
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:putative flagellar motor protein MotA
Functional Category Confidence Code:5
COGs:COG1291,pfam01618
Secondary Functional Category(ies):Motility & Attachment
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69915.1|AE016630_6 (AE016790) flagellar motor protein MotA [Pseudomonas putida KT2440]
          Length = 246

 Score =  412 bits (1060), Expect = e-115
 Identities = 205/246 (83%), Positives = 229/246 (93%)

>gb|AAO55502.1| (AE016862) chemotaxis motA protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 246

 Score =  399 bits (1026), Expect = e-111
 Identities = 196/246 (79%), Positives = 223/246 (90%)

>gb|AAM36771.1| (AE011826) MotA protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 246

 Score =  257 bits (656), Expect = 5e-68
 Identities = 134/245 (54%), Positives = 176/245 (71%)

Structural Features:
COG1291, MotA, Flagellar motor component 
[Cell motility and secretion]
CD-Length = 266 residues,  92.9% aligned
Score =  260 bits (666), Expect = 1e-70
Identities = 107/247 (43%), Positives = 159/247 (64%), Gaps = 1/247 (0%)

pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family.
CD-Length = 139 residues, 100.0% aligned
Score = 93.0 bits (231), Expect = 3e-20
Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 9/141 (6%
Genomic Context:
Comment:
wrt naming of motAB and motCD genes, PMID: 15629949 (Toutain, Zegans and O’Toole, 2005) agrees with 
PAO1 and PA14 annotations, but disagrees with PMID 15375113 (Doyle, Hawkins and McCarter, 2004).
PAO1 annotation, but disagrees with PMID 15375113 (Doyl
ReferenceID:6697
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23839
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37356
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3347_cdd.html
URL:
ReferenceID:37959
Author/Investigator(s): Kato J, Nakamura T, Kuroda A, Ohtake H.
Title: Cloning and characterization of chemotaxis genes in Pseudomonas aeruginosa.
PubMed: 10052136
MedLine:
Source:
Biosci Biotechnol Biochem. 1999 Jan;63(1):155-61.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10052136
ReferenceID:38303
Author/Investigator(s): Toutain CM, Zegans ME, O'Toole GA.
Title: Evidence for two flagellar stators and their role in the motility of Pseudomonas aeruginosa.
PubMed: 15629949
MedLine:
Source:
J Bacteriol. 2005 Jan;187(2):771-7.
Reference Type:Journal
Data:
URL:
ReferenceID:38304
Author/Investigator(s): Doyle TB, Hawkins AC, McCarter LL.
Title: The complex flagellar torque generator of Pseudomonas aeruginosa.
PubMed: 15375113
MedLine:
Source:
J Bacteriol. 2004 Oct;186(19):6341-50.
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:3347

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5366 PA1460_tr translation of PA1460 246 99.99 99.99 0 1222.0
150164 gb|AAG04849.1|AE004575_8 (AE004575) probable chemotaxis transmembrane proton channel [Pseudomonas aeruginosa PAO1] 246 99.99 99.99 0 1222.0
150165 dbj|BAA33551.1| (AB012767) ORF1 [Pseudomonas aeruginosa] 246 99.99 99.99 0 1222.0
150166 gb|AAC08066.1| (AF031898) MotA [Pseudomonas putida] 246 84.55 93.49 0 1069.0
150167 gb|AAN69915.1|AE016630_6 (AE016790) flagellar motor protein MotA [Pseudomonas putida KT2440] 246 83.33 93.08 0 1060.0
GC ORFID: 46349How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1460Glimmer Score:
Start: 900228Stop: 900968
Length: 741
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1460 translation of PA1460Homolog Bit Score 475.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7944 (ORF: BLASTX 399.0), t_PA1460 (ORF: GLIMMER)
GC ORF Sequence
ATGGATGTGCTCAGCCTGGTCGGGATCATCCTGGCGTTCGTCGCCATCGTCGGCGGCAACTTCCTCGAGGGC
GGCCACGCGGGGGCCCTGCTCAACGGTCCGGCGGCGCTGATCGTGATCGGCGGCACCCTGGCCGCGGCGCTG
TTGCAGACCCCGGTGAACGTGCTCAAGCGCGGCCTGGGCATGCTCGGCTGGGTGTTCTTCCCGCCGCGCGAG
GATCTTTCCGGGGGAATCGACCGGATCGTCTCCTGGAGCATGACCGCGCGCAAGGAAGGCCTGCTCGGCCTG
GAGAGCATCGCCGACGCGGAGCCCGATCCCTATGCGCGCAAGGGCCTGCAACTGCTGGTGGACGGCGCCGAG
CCAGAAGTCATCCGCAGCATCCTCGAGGTCGACCTGTTCACCCAGGAAAGCCGCGACCTGCAGGCCGCCAAG
GTGTTCGAGAGCATGGGCGGCTATGCGCCGACCATCGGCATCATCGGCGCGGTAATGGGCCTGATCCATGTG
ATGGGCAACCTGGCCAACCCGGCGCAGCTCGGCAGCGGCATCGCCGTGGCCTTCGTCGCCACCATCTATGGC
GTCGGCTTCGCCAACCTGCTCCTGCTGCCGATCGGCAACAAGCTGAAAACCCTGGTGCTGCGCCAGTCGCGC
TACCGCGAGATGCTCCTGGAGGGCCTGCTGTCCATCGCCGAGGGCGAGAACCCGCGTTCCATCGAGTTGAAG
CTGCAAGGCTTCATGGACTGA