ViewGene

Locus Name:
GeneID:
Location:

GeneID:3345
TrivialName: PA14_21130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21130
PAO1 Ortholog Locus:PA3317
Sequence Length:729
Protein Length:242
Start: 1827906
Stop: 1827178
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06705.1|AE004754_1 (AE004754) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 238/242 (98%), Positives = 240/242 (99%)
Sequence:
ATGCGTACACCACTGCTATCCGCGCTACTGCTGGGCCTGCTGGCCCTCGGCGGCTGCAGCCTGCCCCAACAG
CAGGCCGGCGCGCCGACCGAGCAGCGGCTCGGCACCCAATGGGGCGAAGGCGTCGCCTCGCCGGTCACCTCG
GTGGCCCTGCGACGTCTATCGGAGCAACCGGTCGATCGCCGCCAGGTGTTCTACAGCGCGAGCCGCTTCGAT
GGACGTGCCATCAAGGAACTGCCCCTGGCCAAGGGCCGGGTCGGCTTCGCCGTACTCGACGAGGATGGCGGC
AAGTTCGACCTGGTGCAGCACCGCAGCACCCTGCAACTCCAGGGTCGTGAAGGCCAGCGCTACCGACTGTGG
CTGAACAACCTCGGCGGCGCGACCTACGAGGTGGTCGCCACGGTAGACGGCCTGGACGTGCTCAACGGCCAG
CCGGGCAGCCTGAAGAACCGCGGCTATGTGCTGGAACCGGGCGAGAACCTGGTGATCGAGGGCTTCCGCAAG
AGCGAACGGGAAGTCGCGGCATTCCGCTTCGCCAGTCCCGACGATGCCTACGCCAGCAACAGCGCGGCCGGC
GACAGCCGCAACCTCGGCGTGATCGGCGTGGCCCTGTTCGAGCTGGACGCTCCGGCCAGCGGTCGCGAGGCG
CCGGCCGACGGACCGCAGGCATTTCCCGCCGACGCCCGGAACGGCGGCGGCTACGCGCCGCCGCCACGCTAT
CGCGACTGA
Translation:
MRTPLLSALLLGLLALGGCSLPQQQAGAPTEQRLGTQWGEGVASPVTSVALRRLSEQPVDRRQVFYSASRFD
GRAIKELPLAKGRVGFAVLDEDGGKFDLVQHRSTLQLQGREGQRYRLWLNNLGGATYEVVATVDGLDVLNGQ
PGSLKNRGYVLEPGENLVIEGFRKSEREVAAFRFASPDDAYASNSAAGDSRNLGVIGVALFELDAPASGREA
PADGPQAFPADARNGGGYAPPPRYRD*
AnnotationID:3353GeneID:3345
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 08:08:14
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane lipoprotein
Cell Localization:()
Synonyms:PA3317
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):cell wall / LPS /capsule
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL21960.1| (AE008842) putative outer membrane lipoprotein [Salmonella
           typhimurium LT2]
          Length = 243

 Score =  152 bits (384), Expect = 2e-36
 Identities = 95/240 (39%), Positives = 134/240 (55%), Gaps = 14/240 (5%)
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:6693
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23835
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3345

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5364 PA3317_tr translation of PA3317 242 98.34 99.17 0 1224.0
150125 gb|AAG06705.1|AE004754_1 (AE004754) hypothetical protein PA3317 [Pseudomonas aeruginosa PAO1] 242 98.34 99.17 0 1224.0
150126 gb|AAN81971.1|AE016766_59 (AE016766) Conserved hypothetical protein [Escherichia coli CFT073] 259 38.99 50.96 33 399.0
150127 gb|AAN44409.1|AE015306_5 (AE015306) orf, partial conserved hypothetical protein [Shigella flexneri 2a str. 301] 243 29.62 37.03 112 342.0
150128 gb|AAP18232.1| (AE016988) hypothetical lipoprotein [Shigella flexneri 2a str. 2457T] 243 28.80 35.39 120 335.0
GC ORFID: 46347How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3317Glimmer Score:
Start: 3126026Stop: 3126754
Length: 729
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3317 translation of PA3317Homolog Bit Score 476.0
Other Homologs: t_PA3317 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTACACCACTGCTATCCGCGCTACTGCTGGGCCTGCTGGCCCTCGGCGGCTGCAGCCTGCCCCAACAG
CAGGCCGGCGCGCCGACCGAGCAGCGGCTCGGCACCCAATGGGGCGAAGGCGTCGCCTCGCCGGTCACCTCG
GTGGCCCTGCGACGTCTATCGGAGCAACCGGTCGATCGCCGCCAGGTGTTCTACAGCGCGAGCCGCTTCGAT
GGACGTGCCATCAAGGAACTGCCCCTGGCCAAGGGCCGGGTCGGCTTCGCCGTACTCGACGAGGATGGCGGC
AAGTTCGACCTGGTGCAGCACCGCAGCACCCTGCAACTCCAGGGTCGTGAAGGCCAGCGCTACCGACTGTGG
CTGAACAACCTCGGCGGCGCGACCTACGAGGTGGTCGCCACGGTAGACGGCCTGGACGTGCTCAACGGCCAG
CCGGGCAGCCTGAAGAACCGCGGCTATGTGCTGGAACCGGGCGAGAACCTGGTGATCGAGGGCTTCCGCAAG
AGCGAACGGGAAGTCGCGGCATTCCGCTTCGCCAGTCCCGACGATGCCTACGCCAGCAACAGCGCGGCCGGC
GACAGCCGCAACCTCGGCGTGATCGGCGTGGCCCTGTTCGAGCTGGACGCTCCGGCCAGCGGTCGCGAGGCG
CCGGCCGACGGACCGCAGGCATTTCCCGCCGACGCCCGGAACGGCGGCGGCTACGCGCCGCCGCCACGCTAT
CGCGACTGA