ViewGene
Locus Name:
GeneID:
Location:

GeneID:3344
TrivialName: PA14_32670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32670
PAO1 Ortholog Locus:PA2471
Sequence Length:699
Protein Length:232
Start: 2838287
Stop: 2837589
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05859.1|AE004674_9 (AE004674) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 231/232 (99%), Positives = 232/232 (100%)
Sequence:
ATGAGCCATCTCTTCGCGCCCGAAGCGCCCGTCAGCCTCACCATCCATGGCAGCGACCAGACCTTCCCGGTG
CGGCGGGTCTACTGCGTCGGCCGCAACTACGCCGCCCACGCCCGGGAAATGGGCTTCGATCCCGAGCGCGAG
CCGCCGTTCTTCTTCTGCAAGCCGGCCGACGCGGTGGTCCCGGTCGCCGCCGGCAGCACCCTGGAGCTGGCC
TACCCGAGCCAGACCGGTAACTACCACTACGAGATCGAACTGGTGGCGGCGATCGGCAAGGGCGGCTGCGAC
ATCCCCCTGGAGCAGGCCGAGGAACACGTCTGGGGCTACGCGGTGGGCCTGGACATGACCCGCCGCGACCTG
CAGATGCGCATGCGCGAGATGGGCCGGCCCTGGGAGATCGGCAAGGCCTTCGACCGCTCGGCGCCGATCGGC
CCGCTCTACCCTGCCAGCCAGGTCGGCCATCCGCGCCACGCCGCCATCAGCCTCCAGGTCGACGGCGAGGAT
CGCCAGCGCAGCGACATCGACCAGTTGATCTGGTCGGTGGCGGAAACCGTCAGCTACCTGTCGCGCTTCTTC
GAGCTGCGCCCCGGCGACCTGGTCTTCACCGGCACCCCGGAAGGCGTCGGCGCGGTCGAGCGCGGCGAGCGG
ATGCTCGGCGCCATCGACGGCCTCGGCGAACTCAGCGTCCGCGTGGTCTGA
Translation:
MSHLFAPEAPVSLTIHGSDQTFPVRRVYCVGRNYAAHAREMGFDPEREPPFFFCKPADAVVPVAAGSTLELA
YPSQTGNYHYEIELVAAIGKGGCDIPLEQAEEHVWGYAVGLDMTRRDLQMRMREMGRPWEIGKAFDRSAPIG
PLYPASQVGHPRHAAISLQVDGEDRQRSDIDQLIWSVAETVSYLSRFFELRPGDLVFTGTPEGVGAVERGER
MLGAIDGLGELSVRVV*
AnnotationID:3352GeneID:3344
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 17:05:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2471
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase 
(catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]






   
Genomic Context:






   
Comment:


















    ReferenceID:6691




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23833




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3344
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5363
                           PA2471_tr
                           translation of PA2471
                           232
                           99.56
                           99.99
                           0
                           1224.0
     

     
     
150090
                           gb|AAG05859.1|AE004674_9
                           (AE004674) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           232
                           99.56
                           99.99
                           0
                           1224.0
     

     
     
150091
                           gb|AAL21081.1|
                           (AE008797) putative flutathione S-transferase [Salmonella typhimurium LT2]
                           233
                           71.24
                           84.12
                           1
                           899.0
     

     
     
150092
                           gb|AAO68376.1|
                           (AE016836) FAA-hydrolase-family protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           233
                           71.24
                           84.12
                           1
                           899.0
     

     
     
150093
                           emb|CAD02557.1|
                           (AL627273) FAA-hydrolase-family protein [Salmonella enterica subsp. enterica serovar Typhi]
                           233
                           71.24
                           84.12
                           1
                           899.0
     

     






      

          
GC ORFID: 46346How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2471Glimmer Score: 

          
Start: 2115637Stop: 2116335

          
Length: 699


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2471 translation of PA2471Homolog Bit Score 476.0

          
Other Homologs:  t_PA2471 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCATCTCTTCGCGCCCGAAGCGCCCGTCAGCCTCACCATCCATGGCAGCGACCAGACCTTCCCGGTG 
CGGCGGGTCTACTGCGTCGGCCGCAACTACGCCGCCCACGCCCGGGAAATGGGCTTCGATCCCGAGCGCGAG 
CCGCCGTTCTTCTTCTGCAAGCCGGCCGACGCGGTGGTCCCGGTCGCCGCCGGCAGCACCCTGGAGCTGGCC 
TACCCGAGCCAGACCGGTAACTACCACTACGAGATCGAACTGGTGGCGGCGATCGGCAAGGGCGGCTGCGAC 
ATCCCCCTGGAGCAGGCCGAGGAACACGTCTGGGGCTACGCGGTGGGCCTGGACATGACCCGCCGCGACCTG 
CAGATGCGCATGCGCGAGATGGGCCGGCCCTGGGAGATCGGCAAGGCCTTCGACCGCTCGGCGCCGATCGGC 
CCGCTCTACCCTGCCAGCCAGGTCGGCCATCCGCGCCACGCCGCCATCAGCCTCCAGGTCGACGGCGAGGAT 
CGCCAGCGCAGCGACATCGACCAGTTGATCTGGTCGGTGGCGGAAACCGTCAGCTACCTGTCGCGCTTCTTC 
GAGCTGCGCCCCGGCGACCTGGTCTTCACCGGCACCCCGGAAGGCGTCGGCGCGGTCGAGCGCGGCGAGCGG 
ATGCTCGGCGCCATCGACGGCCTCGGCGAACTCAGCGTCCGCGTGGTCTGA