ViewGene
Locus Name:
GeneID:
Location:

GeneID:3343
TrivialName: PA14_45920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45920
PAO1 Ortholog Locus:PA1434
Sequence Length:714
Protein Length:237
Start: 4081597
Stop: 4082310
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04823.1|AE004573_2 (AE004573) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 235/237 (99%), Positives = 236/237 (99%)
Sequence:
ATGTCCCCACCCCCCGGCGCCCGCCGGCCCTGCCCCAGGGCCTACGCCCCCTGGCTGCTGTCGCTGGCGGCG
ACATTGCTGCTGGCAGTCGGCGCGGCGCTGGCGCAGTGGGACCTGGAGTCGATACTGAGCCGTGCCGAGCAG
CGCTACGGCGAGCTAGGCGCGGCGAAATCACGCCTGGGCGACTGGGGCCGCCTGCTCGAACAGGGCGGCACG
CTCGACGAAGCGGCCAAGCTGCGCGCGGTCAACGACTTCTTCAACCAGTCGCTACGCTTCACCGACGACATC
GAAATCTGGCAGCAGGAAGACTACTGGGCGACTCCGGTCGAGGCGCTGGTCAAGGGCGCAGCCGACTGCGAG
GACTACGCCATCGCCAAGTACGTGACCCTGCGTCGCCTCGGCGTCGCCAGCGACAAGCTGCGCATCACCTAC
GTCAAGGCCCTGCGCCTGAACCAGGCGCACATGGTGCTGACCTGGTACGCCAGCCCGGGCGCCGACCCACTG
GTGCTGGACAACCTGATCGGCGAGATCCGCCCCGCTTCGCAACGCGACGACCTGTTGCCGGTGTACGCCTTC
AATGCCGAGGGCCTCTGGCTGCCCGGCGCCGACGGCGGACGCCGGACCGGCGACAGCAAGAAGCTGTCGCGC
TGGCAGGACCTGCTGACCAAGATGCGCGCCGAAGGCCTCGACCTCGACGCCCCCAAGGAGGATTGA
Translation:
MSPPPGARRPCPRAYAPWLLSLAATLLLAVGAALAQWDLESILSRAEQRYGELGAAKSRLGDWGRLLEQGGT
LDEAAKLRAVNDFFNQSLRFTDDIEIWQQEDYWATPVEALVKGAADCEDYAIAKYVTLRRLGVASDKLRITY
VKALRLNQAHMVLTWYASPGADPLVLDNLIGEIRPASQRDDLLPVYAFNAEGLWLPGADGGRRTGDSKKLSR
WQDLLTKMRAEGLDLDAPKED*
AnnotationID:3351GeneID:3343
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 08:08:04
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic protein
Cell Localization:()
Synonyms:PA1434
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative exported protein
Functional Category Confidence Code:5
COGs:COG3672
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO08027.1|AE016812_9 (AE016812) Predicted periplasmic protein [Vibrio vulnificus CMCP6]
          Length = 237

 Score =  177 bits (449), Expect = 5e-44
 Identities = 97/217 (44%), Positives = 131/217 (60%), Gaps = 12/217 (5%)

>emb|CAE40380.1| (BX640425) putative exported protein [Bordetella parapertussis]
          Length = 227

 Score =  168 bits (426), Expect = 2e-41
 Identities = 101/219 (46%), Positives = 132/219 (60%), Gaps = 15/219 (6%)








 
Structural Features:
COG3672, COG3672, Predicted periplasmic protein
CD-Length = 191 residues, 100.0% aligned
Score =  177 bits (449), Expect = 1e-45
Identities = 69/203 (33%), Positives = 87/203 (42%), Gaps = 14/203 (6%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6689




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23831




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37415




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3343_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3343
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5362
                           PA1434_tr
                           translation of PA1434
                           237
                           99.15
                           99.57
                           0
                           1226.0
     

     
     
150080
                           gb|AAG04823.1|AE004573_2
                           (AE004573) hypothetical protein PA1434 [Pseudomonas aeruginosa PAO1]
                           237
                           99.15
                           99.57
                           0
                           1226.0
     

     
     
150081
                           gb|AAN65797.1|AE016207_4
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           241
                           53.11
                           66.80
                           32
                           656.0
     

     
     
150084
                           gb|AAN57291.1|AE015865_5
                           (AE015865) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           241
                           42.73
                           57.26
                           10
                           450.0
     

     
     
150087
                           emb|CAE40380.1|
                           (BX640425) putative exported protein [Bordetella parapertussis]
                           254
                           42.51
                           55.51
                           44
                           444.0
     

     






      

          
GC ORFID: 46345How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1434Glimmer Score: 

          
Start: 872312Stop: 871599

          
Length: 714


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1434 translation of PA1434Homolog Bit Score 476.0

          
Other Homologs:  t_PA1434 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCCACCCCCCGGCGCCCGCCGGCCCTGCCCCAGGGCCTACGCCCCCTGGCTGCTGTCGCTGGCGGCG 
ACATTGCTGCTGGCAGTCGGCGCGGCGCTGGCGCAGTGGGACCTGGAGTCGATACTGAGCCGTGCCGAGCAG 
CGCTACGGCGAGCTAGGCGCGGCGAAATCACGCCTGGGCGACTGGGGCCGCCTGCTCGAACAGGGCGGCACG 
CTCGACGAAGCGGCCAAGCTGCGCGCGGTCAACGACTTCTTCAACCAGTCGCTACGCTTCACCGACGACATC 
GAAATCTGGCAGCAGGAAGACTACTGGGCGACTCCGGTCGAGGCGCTGGTCAAGGGCGCAGCCGACTGCGAG 
GACTACGCCATCGCCAAGTACGTGACCCTGCGTCGCCTCGGCGTCGCCAGCGACAAGCTGCGCATCACCTAC 
GTCAAGGCCCTGCGCCTGAACCAGGCGCACATGGTGCTGACCTGGTACGCCAGCCCGGGCGCCGACCCACTG 
GTGCTGGACAACCTGATCGGCGAGATCCGCCCCGCTTCGCAACGCGACGACCTGTTGCCGGTGTACGCCTTC 
AATGCCGAGGGCCTCTGGCTGCCCGGCGCCGACGGCGGACGCCGGACCGGCGACAGCAAGAAGCTGTCGCGC 
TGGCAGGACCTGCTGACCAAGATGCGCGCCGAAGGCCTCGACCTCGACGCCCCCAAGGAGGATTGA