ViewGene

Locus Name:
GeneID:
Location:

GeneID:3342
TrivialName: PA14_72890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72890
PAO1 Ortholog Locus:PA5525
Sequence Length:735
Protein Length:244
Start: 6491340
Stop: 6492074
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08910.1|AE004965_2 (AE004965) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 240/244 (98%), Positives = 243/244 (99%)
Sequence:
CTGCAACCTGACGCTTTCCCAGCTTCCGGCGCCACCGGCGACCCGGAGCTGACCATGGCCGAGAATCTCCAG
GAACGACTCTACCAACGACTGCGGGAAGACTTGCTGGCCGGACGTTTCCAGCCCGGCGAGCGACTGAAGATC
CGCGACCTGGCGAACCAGTGGGGCACCAGCCCGATGCCGGTTCGCGCCGCCCTGCAACGGCTGGTGGCGGAA
GGGGCGCTGGAGGGCGAGGCACAACGCTCGCTCAGGGTGCCGCTGATGACCCGCGAGCGTTTCCTGCAGATC
CTCCAGGTGCGCCTGTCCCTCGAAGGGCTGGCGGCCGAAAGCGCCAGCGGCCGGCTGGACGAGCAGGCACTG
GAAGGGCTCGAAGGATGTCTGCGGCGAATGGAGGACGCCTTGCGCCGACGCGAGGTACAGGCCTACCTGGAA
GCCAACAGCGAATTCCACCTGACGCTCTACCGCGCCTGCGGCAACCCGGTGCTGCTGCGTCTCATCGAGACG
CTCTGGCTACAGGTCGGGCCGTTCTTCAACCGGCTGTTCACCGAGGCCGACCTGTCCCTACGCCTGAACGAT
TTCCACGAGGACGCCCTGGAGGCACTGCGCCGCGGCGACGGCCCGGCCGCGCGCGCGGCGATCGAACAGGAC
CTGGCCTATTTCGGCCAGTACCTGCTGAACCTCCTGGAGCTGGAGGCCCGGCCACGAAAGCGACACCGCTCC
GGCGAGCACGCCTGA
Translation:
MQPDAFPASGATGDPELTMAENLQERLYQRLREDLLAGRFQPGERLKIRDLANQWGTSPMPVRAALQRLVAE
GALEGEAQRSLRVPLMTRERFLQILQVRLSLEGLAAESASGRLDEQALEGLEGCLRRMEDALRRREVQAYLE
ANSEFHLTLYRACGNPVLLRLIETLWLQVGPFFNRLFTEADLSLRLNDFHEDALEALRRGDGPAARAAIEQD
LAYFGQYLLNLLELEARPRKRHRSGEHA*
AnnotationID:3350GeneID:3342
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 10:10:59
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA5525
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1802
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAB48504.1| (AP002996) probable transcriptional regulator [Mesorhizobium loti]
          Length = 226

 Score =  151 bits (381), Expect = 4e-36
 Identities = 82/209 (39%), Positives = 124/209 (59%), Gaps = 1/209 (0%)

>dbj|BAB53328.1| (AP003011) transcriptional regulator [Mesorhizobium loti]
          Length = 218

 Score =  150 bits (378), Expect = 8e-36
 Identities = 79/199 (39%), Positives = 123/199 (61%), Gaps = 2/199 (1%)

Structural Features:
COG1802, GntR, Transcriptional regulators [Transcription]
CD-Length = 230 residues, 100.0% aligned
Score =  139 bits (352), Expect = 3e-34
Identities = 81/231 (35%), Positives = 110/231 (47%), Gaps = 2/231 (0%)
Genomic Context:
Comment:
ReferenceID:14801
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23829
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33244
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3342_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3342

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5361 PA5525_tr translation of PA5525 246 97.96 98.78 2 1222.0
150079 gb|AAG08910.1|AE004965_2 (AE004965) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 246 97.96 98.78 2 1222.0
GC ORFID: 46344How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5525Glimmer Score:
Start: 5755029Stop: 5755763
Length: 735
Start Codon: CTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5525 translation of PA5525Homolog Bit Score 477.0
Other Homologs: t_PA5525 (ORF: GLIMMER)
GC ORF Sequence
CTGCAACCTGACGCTTTCCCAGCTTCCGGCGCCACCGGCGACCCGGAGCTGACCATGGCCGAGAATCTCCAG
GAACGACTCTACCAACGACTGCGGGAAGACTTGCTGGCCGGACGTTTCCAGCCCGGCGAGCGACTGAAGATC
CGCGACCTGGCGAACCAGTGGGGCACCAGCCCGATGCCGGTTCGCGCCGCCCTGCAACGGCTGGTGGCGGAA
GGGGCGCTGGAGGGCGAGGCACAACGCTCGCTCAGGGTGCCGCTGATGACCCGCGAGCGTTTCCTGCAGATC
CTCCAGGTGCGCCTGTCCCTCGAAGGGCTGGCGGCCGAAAGCGCCAGCGGCCGGCTGGACGAGCAGGCACTG
GAAGGGCTCGAAGGATGTCTGCGGCGAATGGAGGACGCCTTGCGCCGACGCGAGGTACAGGCCTACCTGGAA
GCCAACAGCGAATTCCACCTGACGCTCTACCGCGCCTGCGGCAACCCGGTGCTGCTGCGTCTCATCGAGACG
CTCTGGCTACAGGTCGGGCCGTTCTTCAACCGGCTGTTCACCGAGGCCGACCTGTCCCTACGCCTGAACGAT
TTCCACGAGGACGCCCTGGAGGCACTGCGCCGCGGCGACGGCCCGGCCGCGCGCGCGGCGATCGAACAGGAC
CTGGCCTATTTCGGCCAGTACCTGCTGAACCTCCTGGAGCTGGAGGCCCGGCCACGAAAGCGACACCGCTCC
GGCGAGCACGCCTGA