ViewGene
Locus Name:
GeneID:
Location:

GeneID:3341
TrivialName: PA14_65760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65760
PAO1 Ortholog Locus:PA4975
Sequence Length:705
Protein Length:234
Start: 5857715
Stop: 5857011
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08360.1|AE004910_7 (AE004910) NAD(P)H quinone oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 234/234 (100%), Positives = 234/234 (100%)
Sequence:
ATGAACGTACTGATCGTCCACGCCCACAACGAACCGCAATCCTTCACCCGCGCGCTCTGTGACCAGGCATGC
GAGACCCTGGCAGGCCAGGGCCACGCGGTGCAGGTCTCGGATCTCTACGCGATGAACTGGAATCCGGTGGCC
AGTGCCGCCGACTTCGCCGAGCGCGCCGATCCCGACTACCTGGTCTACGCCCTGGAGCAGCGCGAGAGCGTC
AAGCGCCAGAGCCTGGCCGCCGACATCCAGGCCGAGCTGGACAAGCTGCTGTGGGCCGACCTGCTGATCCTC
AACTTTCCGATCTACTGGTTCTCGGTGCCGGCGATCCTCAAGGGGTGGTTCGACCGGGTACTGGTGTCCGGG
GTCTGCTATGGCGGCAAGCGCTTCTACGACCAGGGTGGCCTGGCCGGCAAGAAGGCGCTGGTCAGCCTGACC
CTGGGCGGGCGCCAGCACATGTTCGGCGAGGGTGCCATCCACGGACCGCTGGAGGACATGCTGCGGCCGATC
CTGCGCGGCACCCTGGCCTATGTCGGCATGCAGGTGCTGGAGCCCTTTGTCGCCTGGCACGTGCCATACATC
AGCGAGGAAGCGCGCGGCAACTTCCTGCGCGCCTACCGGGCGCGGCTGGAAAATCTCGAGCAGGATGTACCC
CTGCGGTTCCCGCGGCTGGAGCAGTTCGACGCGCTGCTCCAGCCGCTGGCGCGCTGA
Translation:
MNVLIVHAHNEPQSFTRALCDQACETLAGQGHAVQVSDLYAMNWNPVASAADFAERADPDYLVYALEQRESV
KRQSLAADIQAELDKLLWADLLILNFPIYWFSVPAILKGWFDRVLVSGVCYGGKRFYDQGGLAGKKALVSLT
LGGRQHMFGEGAIHGPLEDMLRPILRGTLAYVGMQVLEPFVAWHVPYISEEARGNFLRAYRARLENLEQDVP
LRFPRLEQFDALLQPLAR*
AnnotationID:3349GeneID:3341
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:24
Gene Name:
Confidence Code:2
GeneProduct:NAD(P)H quinone oxidoreductase
Cell Localization:(1) Cytoplasmic
Synonyms:PA4975
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02525,COG2249
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69317.1|AE016569_1 (AE016788) NAD(P)H quinone oxidoreductase, putative [Pseudomonas
           putida KT2440]
          Length = 235

 Score =  376 bits (966), Expect = e-104
 Identities = 181/232 (78%), Positives = 200/232 (86%)






 
Structural Features:
pfam02525, Flavodoxin_2, Flavodoxin-like fold. 
CD-Length = 196 residues,  99.0% aligned
Score =  209 bits (533), Expect = 2e-55
Identities = 90/211 (42%), Positives = 123/211 (58%), Gaps = 17/211 (8%)

COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B)
CD-Length = 189 residues,  98.9% aligned
Score =  178 bits (453), Expect = 5e-46
Identities = 77/211 (36%), Positives = 111/211 (52%), Gaps = 24/211 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6685




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23827




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35088




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3341_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3341
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5359
                           PA4975_tr
                           translation of PA4975
                           234
                           99.99
                           99.99
                           0
                           1227.0
     

     
     
150073
                           gb|AAG08360.1|AE004910_7
                           (AE004910) NAD(P)H quinone oxidoreductase [Pseudomonas aeruginosa PAO1]
                           234
                           99.99
                           99.99
                           0
                           1227.0
     

     
     
150074
                           gb|AAN69317.1|AE016569_1
                           (AE016788) NAD(P)H quinone oxidoreductase, putative [Pseudomonas putida KT2440]
                           236
                           76.69
                           84.74
                           3
                           966.0
     

     
     
5360
                           PA1224_tr
                           translation of PA1224
                           260
                           38.84
                           50.38
                           27
                           446.0
     

     
     
150076
                           gb|AAG04613.1|AE004552_3
                           (AE004552) probable NAD(P)H dehydrogenase [Pseudomonas aeruginosa PAO1]
                           260
                           38.84
                           50.38
                           27
                           446.0
     

     






      

          
GC ORFID: 46343How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4975Glimmer Score: 

          
Start: 5121397Stop: 5120693

          
Length: 705


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4975 translation of PA4975Homolog Bit Score 477.0

          
Other Homologs:  t_PA1224 (ORF: BLASTX 174.0), t_PA4975 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGTACTGATCGTCCACGCCCACAACGAACCGCAATCCTTCACCCGCGCGCTCTGTGACCAGGCATGC 
GAGACCCTGGCAGGCCAGGGCCACGCGGTGCAGGTCTCGGATCTCTACGCGATGAACTGGAATCCGGTGGCC 
AGTGCCGCCGACTTCGCCGAGCGCGCCGATCCCGACTACCTGGTCTACGCCCTGGAGCAGCGCGAGAGCGTC 
AAGCGCCAGAGCCTGGCCGCCGACATCCAGGCCGAGCTGGACAAGCTGCTGTGGGCCGACCTGCTGATCCTC 
AACTTTCCGATCTACTGGTTCTCGGTGCCGGCGATCCTCAAGGGGTGGTTCGACCGGGTACTGGTGTCCGGG 
GTCTGCTATGGCGGCAAGCGCTTCTACGACCAGGGTGGCCTGGCCGGCAAGAAGGCGCTGGTCAGCCTGACC 
CTGGGCGGGCGCCAGCACATGTTCGGCGAGGGTGCCATCCACGGACCGCTGGAGGACATGCTGCGGCCGATC 
CTGCGCGGCACCCTGGCCTATGTCGGCATGCAGGTGCTGGAGCCCTTTGTCGCCTGGCACGTGCCATACATC 
AGCGAGGAAGCGCGCGGCAACTTCCTGCGCGCCTACCGGGCGCGGCTGGAAAATCTCGAGCAGGATGTACCC 
CTGCGGTTCCCGCGGCTGGAGCAGTTCGACGCGCTGCTCCAGCCGCTGGCGCGCTGA