ViewGene
Locus Name:
GeneID:
Location:

GeneID:3340
TrivialName: PA14_09760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09760
PAO1 Ortholog Locus:PA4185
Sequence Length:729
Protein Length:242
Start: 841270
Stop: 840542
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07572.1|AE004835_1 (AE004835) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 242/242 (100%), Positives = 242/242 (100%)
Sequence:
ATGAAAGCCCAACCCGACGTCGACTCGAACAGCGCCGATGCCCCCTTCGACCGCAAGGCGGTGCTGGGCGAT
GCGCTGCGCCGGCGGATCCTGAGCATGGAACTGGCGCCCGGCGCGGTCGTCGACGAACTCGCCCTGTGCGAC
GAGTTCGGCCTCTCGCGCCCGCCGGTGCGCGAACTGCTGCGGCAGATCGCCGCCGAGGGCTACATCGAACTG
GAAGCCAACCGTGCGCCGCGCGTCGCGGCCATGAGCCACGACTCGCTGCACGCCTTCTTTCTCGCCGCGCCG
CTGATCTACATCGCCACCACACAACTGGCGGCCACCCATGCCAGCGAAGCGGAGATCGAGACGCTCAAGGCG
ATCCAGGAAGATTTCCGCAAGGCCATCGAAGAGAAGCATGTGGAAAACCGCGTCATCCACAACGACGCCTTC
CACCTGGAGATCGGCAGGATGGCCCACAACGACTACCTCATGCCCAGCCTGCGCCGCTTGCTGATCGACCAT
GCGCGGCTGGGCAAGATCTTCTACCGCCATCCGACCACCGACGACATGCAACGCGACCTGGAACTCGCCTGC
GACCAGCACGACCAGATCGTCGATGCCATCCAGCGGCGCGATCCGGATGCGGCGGCGGACATCGTCCGTGCG
CATTTCGAGCTGTCGCGCCGGCGCATGGCCGAGTACGCGGCGCCGGCCGGAGTGGAGGTGGCGCTGGTCTAC
GAGGGTTAG
Translation:
MKAQPDVDSNSADAPFDRKAVLGDALRRRILSMELAPGAVVDELALCDEFGLSRPPVRELLRQIAAEGYIEL
EANRAPRVAAMSHDSLHAFFLAAPLIYIATTQLAATHASEAEIETLKAIQEDFRKAIEEKHVENRVIHNDAF
HLEIGRMAHNDYLMPSLRRLLIDHARLGKIFYRHPTTDDMQRDLELACDQHDQIVDAIQRRDPDAAADIVRA
HFELSRRRMAEYAAPAGVEVALVYEG*
AnnotationID:3348GeneID:3340
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 08:08:34
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, GntR family
Cell Localization:()
Synonyms:PA4185
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1802,COG2186
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD15821.1| (AL646068) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 243

 Score =  337 bits (863), Expect = 5e-92
 Identities = 170/239 (71%), Positives = 200/239 (83%)

>gb|AAL44763.1| (AE009326) transcriptional regulator, GntR family [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 236

 Score =  180 bits (457), Expect = 6e-45
 Identities = 99/220 (45%), Positives = 135/220 (61%), Gaps = 1/220 (0%)






 
Structural Features:
COG1802, GntR, Transcriptional regulators [Transcription]
CD-Length = 230 residues,  97.4% aligned
Score =  126 bits (317), Expect = 3e-30
Identities = 83/230 (36%), Positives = 116/230 (50%), Gaps = 6/230 (2%)

COG2186, FadR, Transcriptional regulators [Transcription]
CD-Length = 241 residues,  90.9% aligned
Score = 89.7 bits (222), Expect = 3e-19
Identities = 63/227 (27%), Positives = 94/227 (41%), Gaps = 25/227 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6683




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23825




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36876




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3340_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3340
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5358
                           PA4185_tr
                           translation of PA4185
                           242
                           99.99
                           99.99
                           0
                           1227.0
     

     
     
150069
                           gb|AAG07572.1|AE004835_1
                           (AE004835) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           242
                           99.99
                           99.99
                           0
                           1227.0
     

     
     
150070
                           emb|CAD15821.1|
                           (AL646068) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           245
                           69.38
                           81.63
                           5
                           862.0
     

     
     
150071
                           gb|AAL44763.1|
                           (AE009326) transcriptional regulator, GntR family [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           251
                           40.63
                           55.37
                           24
                           450.0
     

     
     
150072
                           gb|AAK89465.1|
                           (AE008288) AGR_L_1787p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           346
                           29.47
                           40.17
                           119
                           450.0
     

     






      

          
GC ORFID: 46342How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4185Glimmer Score: 

          
Start: 4112667Stop: 4113395

          
Length: 729


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4185 translation of PA4185Homolog Bit Score 477.0

          
Other Homologs:  t_PA4185 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCCCAACCCGACGTCGACTCGAACAGCGCCGATGCCCCCTTCGACCGCAAGGCGGTGCTGGGCGAT 
GCGCTGCGCCGGCGGATCCTGAGCATGGAACTGGCGCCCGGCGCGGTCGTCGACGAACTCGCCCTGTGCGAC 
GAGTTCGGCCTCTCGCGCCCGCCGGTGCGCGAACTGCTGCGGCAGATCGCCGCCGAGGGCTACATCGAACTG 
GAAGCCAACCGTGCGCCGCGCGTCGCGGCCATGAGCCACGACTCGCTGCACGCCTTCTTTCTCGCCGCGCCG 
CTGATCTACATCGCCACCACACAACTGGCGGCCACCCATGCCAGCGAAGCGGAGATCGAGACGCTCAAGGCG 
ATCCAGGAAGATTTCCGCAAGGCCATCGAAGAGAAGCATGTGGAAAACCGCGTCATCCACAACGACGCCTTC 
CACCTGGAGATCGGCAGGATGGCCCACAACGACTACCTCATGCCCAGCCTGCGCCGCTTGCTGATCGACCAT 
GCGCGGCTGGGCAAGATCTTCTACCGCCATCCGACCACCGACGACATGCAACGCGACCTGGAACTCGCCTGC 
GACCAGCACGACCAGATCGTCGATGCCATCCAGCGGCGCGATCCGGATGCGGCGGCGGACATCGTCCGTGCG 
CATTTCGAGCTGTCGCGCCGGCGCATGGCCGAGTACGCGGCGCCGGCCGGAGTGGAGGTGGCGCTGGTCTAC 
GAGGGTTAG