ViewGene
Locus Name:
GeneID:
Location:

GeneID:3339
TrivialName: PA14_41500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41500
PAO1 Ortholog Locus:PA1784
Sequence Length:696
Protein Length:231
Start: 3701850
Stop: 3702545
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05173.1|AE004604_3 (AE004604) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 231/231 (100%), Positives = 231/231 (100%)
Sequence:
ATGATCGATCTCAGCACCTGGAACCTTACCATTCCCACCGAACCCACCCCGCAGGTGATCACCACCCAGCAA
CTCAACAACGGCTACCAGAGCCGGTACTTCCAGCAAGGCAACGATGGCGGCCTGGTCTTCTGGGTGCCCATC
GACGGCTCGCACACCGAGGACAGCACCTATCCTCGCACCGAACTGCGCGAAACCCAGGCCGACGGCAGCCTC
GACAACTGGTACTACTGGCAGGCCGACAACGAATTGCGGGTGACCATGAGCGTCGAGAAGGTCCCCTCGAAG
AACAAGGTGATCATCGGCCAGATCCACAGCAAGTCGCCACAGACCGACGACGGCGAACCTCTGGTGAAGCTG
CAGTACTACTACAAGCCCGAGGAAGGCCTCGGCCGGGTCGAGGCGCTGGTACGCAACCACCCGGACGATTCC
TATAGCCGCAACGTGTCGATCCTCGAGCAGGTACGCCTGGGCGAGCGTTTCAACTACAGCCTGCGCGTCACC
TCCAGCGGCGAGTTGGCGGTGCGCGCACGCAGCCAGGACGGCGAAGAGGACGCTTACTACCAGACCCTCGGC
AGCGCCTGGAACGACCAGTTGCTCTATTTCAAGGCCGGCGCCTACGTGAACGACAACGCCGGCGACAGCGGC
GAAGGCAGCCGCGTGACCATCTACCACCTGAACACCGCCCATCGCTGA
Translation:
MIDLSTWNLTIPTEPTPQVITTQQLNNGYQSRYFQQGNDGGLVFWVPIDGSHTEDSTYPRTELRETQADGSL
DNWYYWQADNELRVTMSVEKVPSKNKVIIGQIHSKSPQTDDGEPLVKLQYYYKPEEGLGRVEALVRNHPDDS
YSRNVSILEQVRLGERFNYSLRVTSSGELAVRARSQDGEEDAYYQTLGSAWNDQLLYFKAGAYVNDNAGDSG
EGSRVTIYHLNTAHR*
AnnotationID:3347GeneID:3339
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 12:12:59
Gene Name:
Confidence Code:3
GeneProduct:putative lyase
Cell Localization:()
Synonyms:PA1784
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58443.1| (AE016874) lyase, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 223

 Score =  191 bits (485), Expect = 3e-48
 Identities = 96/230 (41%), Positives = 141/230 (61%), Gaps = 10/230 (4%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6681




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23823




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3339
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5356
                           PA1784_tr
                           translation of PA1784
                           231
                           99.99
                           99.99
                           0
                           1228.0
     

     
     
150065
                           gb|AAG05173.1|AE004604_3
                           (AE004604) hypothetical protein PA1784 [Pseudomonas aeruginosa PAO1]
                           231
                           99.99
                           99.99
                           0
                           1228.0
     

     
     
5357
                           PA1167_tr
                           translation of PA1167
                           231
                           46.75
                           61.90
                           8
                           502.0
     

     
     
150066
                           gb|AAG04556.1|AE004547_2
                           (AE004547) hypothetical protein PA1167 [Pseudomonas aeruginosa PAO1]
                           231
                           46.75
                           61.90
                           8
                           502.0
     

     
     
150068
                           gb|AAO57079.1|
                           (AE016868) lyase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           234
                           42.73
                           59.40
                           15
                           485.0
     

     






      

          
GC ORFID: 46341How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1784Glimmer Score: 

          
Start: 1252059Stop: 1251364

          
Length: 696


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1784 translation of PA1784Homolog Bit Score 477.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3694 (ORF: BLASTX 199.0), t_PA1167 (ORF: BLASTX 194.0), psyr_15may02_Scaffold9_revised_gene7978 (ORF: BLASTX 189.0), t_PA1784 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGATCTCAGCACCTGGAACCTTACCATTCCCACCGAACCCACCCCGCAGGTGATCACCACCCAGCAA 
CTCAACAACGGCTACCAGAGCCGGTACTTCCAGCAAGGCAACGATGGCGGCCTGGTCTTCTGGGTGCCCATC 
GACGGCTCGCACACCGAGGACAGCACCTATCCTCGCACCGAACTGCGCGAAACCCAGGCCGACGGCAGCCTC 
GACAACTGGTACTACTGGCAGGCCGACAACGAATTGCGGGTGACCATGAGCGTCGAGAAGGTCCCCTCGAAG 
AACAAGGTGATCATCGGCCAGATCCACAGCAAGTCGCCACAGACCGACGACGGCGAACCTCTGGTGAAGCTG 
CAGTACTACTACAAGCCCGAGGAAGGCCTCGGCCGGGTCGAGGCGCTGGTACGCAACCACCCGGACGATTCC 
TATAGCCGCAACGTGTCGATCCTCGAGCAGGTACGCCTGGGCGAGCGTTTCAACTACAGCCTGCGCGTCACC 
TCCAGCGGCGAGTTGGCGGTGCGCGCACGCAGCCAGGACGGCGAAGAGGACGCTTACTACCAGACCCTCGGC 
AGCGCCTGGAACGACCAGTTGCTCTATTTCAAGGCCGGCGCCTACGTGAACGACAACGCCGGCGACAGCGGC 
GAAGGCAGCCGCGTGACCATCTACCACCTGAACACCGCCCATCGCTGA