ViewGene

Locus Name:
GeneID:
Location:

GeneID:3338
TrivialName: PA14_52060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52060
PAO1 Ortholog Locus:PA0943
Sequence Length:717
Protein Length:238
Start: 4619455
Stop: 4620171
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04332.1|AE004528_10 (AE004528) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 238/238 (100%), Positives = 238/238 (100%)
Sequence:
ATGCGTAAAGCCATGCTGTTCCTGCTGACGCTGCTGACCCTGCCGGCCTATGCCTTCGAGCTGAAGCCGTTC
ACCGCCAGCTATACCGCCGACTGGAAACAGATGCCCATCAGCGGCAATGCCTCCCGCAGCCTGAAGGCTCTC
GGCGACGGCCGCTGGCAACTGGACTTCGAGGCCTCCATGCTGCTGGCCAGTCTCAACGAAGTCAGCACCTTC
AAGGTCGAGAACGACACCTTCCTGCCACAGACCTACCGCTTCGCTCGCCAAGGTCTGGGCAAAGGCAAGCAG
ATCGAACTGGACTTCGACTGGTCGCAGAAGCAGGTGCTCGGCAGCGACCGCGGCGATGCGGTGCGGCAACCC
CTGAATCGCGGTCAACTGGACAAGTCCACCTATCAACTGGTCCTGCAGCATGACGTTGCCGACGGCAAGAAG
AGCATGAGCTACCAGATCATCGAGGGCGAGGATGTCGATACCTACGACTTCCGGGTTCTCGGCGAGGAAAAG
GTACGCACCCAGGCCGGCCTGATCAACGCGATCAAGGTCGAGCGCGTGCGTGATCCGGGCAAGAGCAACCGC
AAGACCATCCTCTGGTTCGCCAAGGACTGGGACTACCTGCTGGTCCGCCTGTACCAGATGGAAACCGACGGC
AAGGAATACCAGATCATGCTCAAGGAAGGCACCATCGACGGCAAGACCGTCACTGGCGAAAAGAGCTGA
Translation:
MRKAMLFLLTLLTLPAYAFELKPFTASYTADWKQMPISGNASRSLKALGDGRWQLDFEASMLLASLNEVSTF
KVENDTFLPQTYRFARQGLGKGKQIELDFDWSQKQVLGSDRGDAVRQPLNRGQLDKSTYQLVLQHDVADGKK
SMSYQIIEGEDVDTYDFRVLGEEKVRTQAGLINAIKVERVRDPGKSNRKTILWFAKDWDYLLVRLYQMETDG
KEYQIMLKEGTIDGKTVTGEKS*
AnnotationID:3346GeneID:3338
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 13:01:53
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0943
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:6679
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23821
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3338

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5355 PA0943_tr translation of PA0943 238 99.99 99.99 0 1227.0
150062 gb|AAG04332.1|AE004528_10 (AE004528) hypothetical protein PA0943 [Pseudomonas aeruginosa PAO1] 238 99.99 99.99 0 1227.0
150063 gb|AAO55218.1| (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 239 65.69 81.17 3 837.0
150064 gb|AAN67284.1|AE016355_2 (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440] 238 64.28 80.67 2 833.0
GC ORFID: 46340How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0943Glimmer Score:
Start: 334452Stop: 333736
Length: 717
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0943 translation of PA0943Homolog Bit Score 477.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene5927 (ORF: BLASTX 332.0), t_PA0943 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTAAAGCCATGCTGTTCCTGCTGACGCTGCTGACCCTGCCGGCCTATGCCTTCGAGCTGAAGCCGTTC
ACCGCCAGCTATACCGCCGACTGGAAACAGATGCCCATCAGCGGCAATGCCTCCCGCAGCCTGAAGGCTCTC
GGCGACGGCCGCTGGCAACTGGACTTCGAGGCCTCCATGCTGCTGGCCAGTCTCAACGAAGTCAGCACCTTC
AAGGTCGAGAACGACACCTTCCTGCCACAGACCTACCGCTTCGCTCGCCAAGGTCTGGGCAAAGGCAAGCAG
ATCGAACTGGACTTCGACTGGTCGCAGAAGCAGGTGCTCGGCAGCGACCGCGGCGATGCGGTGCGGCAACCC
CTGAATCGCGGTCAACTGGACAAGTCCACCTATCAACTGGTCCTGCAGCATGACGTTGCCGACGGCAAGAAG
AGCATGAGCTACCAGATCATCGAGGGCGAGGATGTCGATACCTACGACTTCCGGGTTCTCGGCGAGGAAAAG
GTACGCACCCAGGCCGGCCTGATCAACGCGATCAAGGTCGAGCGCGTGCGTGATCCGGGCAAGAGCAACCGC
AAGACCATCCTCTGGTTCGCCAAGGACTGGGACTACCTGCTGGTCCGCCTGTACCAGATGGAAACCGACGGC
AAGGAATACCAGATCATGCTCAAGGAAGGCACCATCGACGGCAAGACCGTCACTGGCGAAAAGAGCTGA