ViewGene
Locus Name:
GeneID:
Location:

GeneID:3337
TrivialName: PA14_52530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52530
PAO1 Ortholog Locus:PA0906
Sequence Length:714
Protein Length:237
Start: 4659047
Stop: 4659760
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04295.1|AE004525_3 (AE004525) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 237/237 (100%), Positives = 237/237 (100%)
Sequence:
ATGGAACTCAAAGATCGCATcaagGCGGCGCGCAAGCACGCCCATCTCAGCcAgGTCCAGCTTGCCCAGGCG
GTAGGCATGACCCAGACCTCCATTTCCGATCTGGAGCGCGGCAAGTCCCGCGCCACCAGCTTCGTCGCGCAG
ATCGCCGGCGCCTGCGGCGTCAACCCCCTGTGGCTGGCGGAAGGTCGCGGCGAGATGCTCGCCGAGCGCGGC
CAGGCGAACGCAGGACCCAATGCCAGTTGGCTTGGCGCAGTAGAGTCATGGGACGACGAAACGCCCCTGGAT
GCCGACGAGATCGAACTGCCCTTCTACAAGGAGATCGAGCTGTCCGGCGGCAAGGGCAGCACGGTGATCCTG
CAGACCGGCGGGCGCAAGCTGCGCTTCGGCAAGTACACCCTGCGCAAGAAGAACATCGATCCGGCCAGTGCC
GCCTGCGTCACGGTCAGCGGCAACAGCATGGAGCCGGTgCTGCCGGACGGCAGCACGGTAGGCGTGGACACT
AGCGCGCGGACGATCAAGGACGGCGACATGTACGCCTTCGACCACGACGGCCAACTGCGCGTGAAACTGCTC
TACCGCCTTCCGGGCGGCGGCCTGCGCATTCGCAGCTTCAACAGCGACGAGCACCCGGACGAGCGCTACGAG
CCCCAGGAAGCCGCCGAGCACATCAACGTGATCGGCCGGGTGTTCTGGTACTCGGTGCTGGTCTGA
Translation:
MELKDRIKAARKHAHLSQVQLAQAVGMTQTSISDLERGKSRATSFVAQIAGACGVNPLWLAEGRGEMLAERG
QANAGPNASWLGAVESWDDETPLDADEIELPFYKEIELSGGKGSTVILQTGGRKLRFGKYTLRKKNIDPASA
ACVTVSGNSMEPVLPDGSTVGVDTSARTIKDGDMYAFDHDGQLRVKLLYRLPGGGLRIRSFNSDEHPDERYE
PQEAAEHINVIGRVFWYSVLV*
AnnotationID:3345GeneID:3337
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 13:01:14
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA0906
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2932
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
100% identical to PA0906, and 43.35% identical to prtR (PA0611) of PAO1 or 
prtR (GeneID=3114) of PA14.






 
Structural Features:
COG2932, Predicted transcriptional regulator. Score: 147, 1e-36
cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Score: 54.8, 1e-08
pfam07022, Phage_CI_repr, Bacteriophage CI repressor protein. Score: 41.4, 9e-05






   
Genomic Context:






   
Comment:


















    ReferenceID:6677




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23819




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3337
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5353
                           PA0906_tr
                           translation of PA0906
                           237
                           99.99
                           99.99
                           0
                           1228.0
     

     
     
150054
                           gb|AAG04295.1|AE004525_3
                           (AE004525) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           237
                           99.99
                           99.99
                           0
                           1228.0
     

     
     
150058
                           dbj|BAA83146.1|
                           (AB030825) PRF4 [Pseudomonas aeruginosa]
                           256
                           43.35
                           61.32
                           19
                           584.0
     

     
     
150057
                           dbj|BAA83132.1|
                           (AB030826) PRF4 [Pseudomonas aeruginosa]
                           256
                           43.35
                           61.32
                           19
                           584.0
     

     
     
150056
                           dbj|BAA02198.1|
                           (D12706) negative regulator of pyocin genes [Pseudomonas aeruginosa]
                           256
                           43.35
                           61.32
                           19
                           584.0
     

     






      

          
GC ORFID: 46339How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0906Glimmer Score: 

          
Start: 294860Stop: 294147

          
Length: 714


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0906 translation of PA0906Homolog Bit Score 477.0

          
Other Homologs:  t_PA0611 (ORF: BLASTX 236.0), t_PA0906 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACTCAAAGATCGCATcaagGCGGCGCGCAAGCACGCCCATCTCAGCcAgGTCCAGCTTGCCCAGGCG 
GTAGGCATGACCCAGACCTCCATTTCCGATCTGGAGCGCGGCAAGTCCCGCGCCACCAGCTTCGTCGCGCAG 
ATCGCCGGCGCCTGCGGCGTCAACCCCCTGTGGCTGGCGGAAGGTCGCGGCGAGATGCTCGCCGAGCGCGGC 
CAGGCGAACGCAGGACCCAATGCCAGTTGGCTTGGCGCAGTAGAGTCATGGGACGACGAAACGCCCCTGGAT 
GCCGACGAGATCGAACTGCCCTTCTACAAGGAGATCGAGCTGTCCGGCGGCAAGGGCAGCACGGTGATCCTG 
CAGACCGGCGGGCGCAAGCTGCGCTTCGGCAAGTACACCCTGCGCAAGAAGAACATCGATCCGGCCAGTGCC 
GCCTGCGTCACGGTCAGCGGCAACAGCATGGAGCCGGTgCTGCCGGACGGCAGCACGGTAGGCGTGGACACT 
AGCGCGCGGACGATCAAGGACGGCGACATGTACGCCTTCGACCACGACGGCCAACTGCGCGTGAAACTGCTC 
TACCGCCTTCCGGGCGGCGGCCTGCGCATTCGCAGCTTCAACAGCGACGAGCACCCGGACGAGCGCTACGAG 
CCCCAGGAAGCCGCCGAGCACATCAACGTGATCGGCCGGGTGTTCTGGTACTCGGTGCTGGTCTGA