ViewGene

Locus Name:
GeneID:
Location:

GeneID:3336
TrivialName: PA14_04050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04050
PAO1 Ortholog Locus:PA0310
Sequence Length:699
Protein Length:232
Start: 365035
Stop: 365733
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03699.1|AE004469_4 (AE004469) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 231/232 (99%), Positives = 231/232 (99%)
Sequence:
ATGGGGCGCTATTGTCGACATGCGGCGGACCGCTTGTCGAGACACCGGGGCGGCACGCTACAATGGACAATG
CACATCAACGTCAATCATCCACTCCTGCATCGCATCGTCGATGAACTGGTCGACCAGGGCTGGTCGCACCAG
AGCATCTTCATGCCTGAGCGTCTGACCACCAGATTGGCCGAAGAGTGCCGCACCCGTGCGGTCGCGGGCGAC
CTGACCCCGGCGGCGATCGGCCGCGGCGACGGCCAGGTGATCCGCGAAGGCATCCGCGGCGACCTCACGCAA
TGGCTGGAGCCCGGAGAATCCGTGGCCTGCGACGAATACCTGGGGGTGATGGACAGCTTGCGCCAGGCGCTC
AACGCCTCGCTGTTCCTCGGCCTCGAGGATTTCGAGTGCCACTTCGCGCTGTACCCGCCGGGCGCCTATTAC
CAGAAGCATGTCGATCGTTTCCGCGACGACGACGCACGCACCGTCTCCGCGGTTCTCTACCTCAACGATGCC
TGGTTGCCCGAGCATGGCGGCGCGCTGCGCCTGCACCTGCCGCAGCGGCAGGTGGACATCCAGCCGACGGGC
GGTAGCCTGGTGGTGTTCATGTCCGCCGGCACCGAGCACGAAGTCCTGCCCGCCAGCCGCGACCGGCTGTCG
CTGACCGGCTGGTTCCGCCGGCGCAACGAATCTCTCCTGCAACTCTCCTGA
Translation:
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGD
LTPAAIGRGDGQVIREGIRGDLTQWLEPGESVACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYY
QKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLS
LTGWFRRRNESLLQLS*
AnnotationID:3344GeneID:3336
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 08:08:30
Gene Name:
Confidence Code:3
GeneProduct:putative proline hydroxylase
Cell Localization:()
Synonyms:PA0310
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3751,smart00702
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58722.1| (AE016875) oxidoreductase, 2OG-Fe(II) oxygenase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 244

 Score =  286 bits (731), Expect = 9e-77
 Identities = 146/227 (64%), Positives = 166/227 (73%), Gaps = 6/227 (2%)
Structural Features:
COG3751, EGL-9, Predicted proline hydroxylase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 252 residues,  98.8% aligned
Score =  215 bits (548), Expect = 4e-57
Identities = 78/249 (31%), Positives = 101/249 (40%), Gaps = 17/249 (6%)

smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues. 
CD-Length = 178 residues, 100.0% aligned
Score = 95.5 bits (237), Expect = 5e-21
Identities = 54/187 (28%), Positives = 71/187 (37%), Gaps = 16/187 (8%)
Genomic Context:
Comment:
ReferenceID:6675
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23817
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33653
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3336_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3336

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5352 PA0310_tr translation of PA0310 232 99.56 99.56 0 1231.0
150050 gb|AAG03699.1|AE004469_4 (AE004469) hypothetical protein PA0310 [Pseudomonas aeruginosa PAO1] 232 99.56 99.56 0 1231.0
150051 gb|AAO58722.1| (AE016875) oxidoreductase, 2OG-Fe(II) oxygenase family [Pseudomonas syringae pv. tomato str. DC3000] 248 59.27 67.33 20 735.0
150052 gb|AAN70724.1|AE016716_3 (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440] 234 52.13 63.67 29 661.0
150053 gb|AAQ58858.1| (AE016914) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 319 30.40 41.06 92 436.0
GC ORFID: 46338How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0310Glimmer Score:
Start: 6166377Stop: 6167075
Length: 699
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0310 translation of PA0310Homolog Bit Score 478.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6520 (ORF: BLASTX 285.0), t_PA0310 (ORF: GLIMMER)
GC ORF Sequence
ATGGGGCGCTATTGTCGACATGCGGCGGACCGCTTGTCGAGACACCGGGGCGGCACGCTACAATGGACAATG
CACATCAACGTCAATCATCCACTCCTGCATCGCATCGTCGATGAACTGGTCGACCAGGGCTGGTCGCACCAG
AGCATCTTCATGCCTGAGCGTCTGACCACCAGATTGGCCGAAGAGTGCCGCACCCGTGCGGTCGCGGGCGAC
CTGACCCCGGCGGCGATCGGCCGCGGCGACGGCCAGGTGATCCGCGAAGGCATCCGCGGCGACCTCACGCAA
TGGCTGGAGCCCGGAGAATCCGTGGCCTGCGACGAATACCTGGGGGTGATGGACAGCTTGCGCCAGGCGCTC
AACGCCTCGCTGTTCCTCGGCCTCGAGGATTTCGAGTGCCACTTCGCGCTGTACCCGCCGGGCGCCTATTAC
CAGAAGCATGTCGATCGTTTCCGCGACGACGACGCACGCACCGTCTCCGCGGTTCTCTACCTCAACGATGCC
TGGTTGCCCGAGCATGGCGGCGCGCTGCGCCTGCACCTGCCGCAGCGGCAGGTGGACATCCAGCCGACGGGC
GGTAGCCTGGTGGTGTTCATGTCCGCCGGCACCGAGCACGAAGTCCTGCCCGCCAGCCGCGACCGGCTGTCG
CTGACCGGCTGGTTCCGCCGGCGCAACGAATCTCTCCTGCAACTCTCCTGA