ViewGene
Locus Name:
GeneID:
Location:

GeneID:3335
TrivialName: PA14_16880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16880
PAO1 Ortholog Locus:PA3671
Sequence Length:735
Protein Length:244
Start: 1446939
Stop: 1447673
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07059.1|AE004786_11 (AE004786) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 243/244 (99%), Positives = 243/244 (99%)
Sequence:
ATGAAGCAACTGCCGGTGATCTTCAAGCGCGAGCTGGCGAGTTATTTCGCCACGCCGCTGGCCTATGTGTTC
ATCGTGATCTTCCTGGTCCTGGCGGGCGTGTTCACCTTCTACCTGGGCAACTTCTACGAACGCAACCAGGCC
GACCTGGCCTCCTTCTTCGCCTTCCATCCCTGGCTCTACCTGTTCCTGGTTCCCGCGCTGGCCATGCGCCTG
TGGGCGGAGGAGCGCAAGTCCGGCTCGATCGAGCTGCTGATGACCCTGCCGCTGACCCGCTTCGAAGCCGTG
GCCGGCAAGTTCCTGGCCGCCTGGGCGTTCGCCGGAATCGCGCTGCTGCTGACCTTCCCCATGGTGCTCACG
GTGAACTACCTGGGCGAGCCGGACAACGGTGCGATTCTCGCCGGCTATCTGGGCAGTTGGCTGCTGGCCGGC
GGCTACCTGGCCATCGGTTCGTGCATGTCGGCCCTGGCGAAGAACCAGGTGATCGCTTTCATCCTCGCCGTG
GCCGCCTGCTTCCTGTTCATGCTCAGCGGCTTTCCGCTGGTGCTCGATGCGTTCAGCCAGTGGGCGCCGCAG
TGGTTGCTCGATGCGGTGGCCTCGCTGAGCCTGCTGACCCGCTTCGATGCCGTCAGCAAGGGCGTCATCGAC
CTGCGCGACCTGCTGTATTTCGTCAGCCTGATCGTCGCCTGGCTGGCCGCCACGGCGGTGGCGGTCGACCTG
AAGAAAGCCGAATGA
Translation:
MKQLPVIFKRELASYFATPLAYVFIVIFLVLAGVFTFYLGNFYERNQADLASFFAFHPWLYLFLVPALAMRL
WAEERKSGSIELLMTLPLTRFEAVAGKFLAAWAFAGIALLLTFPMVLTVNYLGEPDNGAILAGYLGSWLLAG
GYLAIGSCMSALAKNQVIAFILAVAACFLFMLSGFPLVLDAFSQWAPQWLLDAVASLSLLTRFDAVSKGVID
LRDLLYFVSLIVAWLAATAVAVDLKKAE*
AnnotationID:3343GeneID:3335
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 10:10:01
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:PA3671
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1277
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC67100.1| (AE001175) membrane spanning protein, putative [Borrelia
           burgdorferi B31]
          Length = 244

 Score =  142 bits (359), Expect = 1e-33
 Identities = 79/243 (32%), Positives = 141/243 (58%), Gaps = 6/243 (2%)

>gb|AAM25309.1| (AE013160) ABC-type transport system involved in multi-copper
           enzyme maturation, permease component
           [Thermoanaerobacter tengcongensis]
          Length = 235

 Score =  130 bits (327), Expect = 7e-30
 Identities = 84/252 (33%), Positives = 139/252 (55%), Gaps = 29/252 (11%)






 
Structural Features:
COG1277, NosY, ABC-type transport system involved in multi-copper enzyme 
maturation, permease component 
CD-Length = 278 residues,  97.5% aligned
Score = 51.7 bits (123), Expect = 2e-07
Identities = 61/271 (22%), Positives = 109/271 (40%), Gaps = 29/271 (10%)








   
Genomic Context:






   
Comment:


















    ReferenceID:6673




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23815




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31874




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3335_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3335
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5350
                           PA3671_tr
                           translation of PA3671
                           244
                           99.59
                           99.59
                           0
                           1229.0
     

     
     
150048
                           gb|AAG07059.1|AE004786_11
                           (AE004786) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           244
                           99.59
                           99.59
                           0
                           1229.0
     

     
     
5351
                           PA4038_tr
                           translation of PA4038
                           244
                           70.90
                           81.96
                           0
                           909.0
     

     
     
150049
                           gb|AAG07425.1|AE004820_10
                           (AE004820) hypothetical protein PA4038 [Pseudomonas aeruginosa PAO1]
                           244
                           70.90
                           81.96
                           0
                           909.0
     

     






      

          
GC ORFID: 46337How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3671Glimmer Score: 

          
Start: 3506998Stop: 3506264

          
Length: 735


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3671 translation of PA3671Homolog Bit Score 478.0

          
Other Homologs:  t_PA4038 (ORF: BLASTX 355.0), t_PA3671 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCAACTGCCGGTGATCTTCAAGCGCGAGCTGGCGAGTTATTTCGCCACGCCGCTGGCCTATGTGTTC 
ATCGTGATCTTCCTGGTCCTGGCGGGCGTGTTCACCTTCTACCTGGGCAACTTCTACGAACGCAACCAGGCC 
GACCTGGCCTCCTTCTTCGCCTTCCATCCCTGGCTCTACCTGTTCCTGGTTCCCGCGCTGGCCATGCGCCTG 
TGGGCGGAGGAGCGCAAGTCCGGCTCGATCGAGCTGCTGATGACCCTGCCGCTGACCCGCTTCGAAGCCGTG 
GCCGGCAAGTTCCTGGCCGCCTGGGCGTTCGCCGGAATCGCGCTGCTGCTGACCTTCCCCATGGTGCTCACG 
GTGAACTACCTGGGCGAGCCGGACAACGGTGCGATTCTCGCCGGCTATCTGGGCAGTTGGCTGCTGGCCGGC 
GGCTACCTGGCCATCGGTTCGTGCATGTCGGCCCTGGCGAAGAACCAGGTGATCGCTTTCATCCTCGCCGTG 
GCCGCCTGCTTCCTGTTCATGCTCAGCGGCTTTCCGCTGGTGCTCGATGCGTTCAGCCAGTGGGCGCCGCAG 
TGGTTGCTCGATGCGGTGGCCTCGCTGAGCCTGCTGACCCGCTTCGATGCCGTCAGCAAGGGCGTCATCGAC 
CTGCGCGACCTGCTGTATTTCGTCAGCCTGATCGTCGCCTGGCTGGCCGCCACGGCGGTGGCGGTCGACCTG 
AAGAAAGCCGAATGA