ViewGene
Locus Name:
GeneID:
Location:

GeneID:3334
TrivialName: PA14_42890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42890
PAO1 Ortholog Locus:PA1670
Sequence Length:729
Protein Length:242
Start: 3812214
Stop: 3811486
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05059.1|AE004594_11 (AE004594) serine/threonine phosphoprotein phosphatase Stp1 [Pseudomonas aeruginosa PAO1]
Identities = 241/242 (99%), Positives = 241/242 (99%)
Sequence:
ATGCAACGCACCGAGCCCTGGCGCAGCGCGGCGCGCACGGATCGCGGCAAGGTCCGCGCGCGCAACGAGGAT
GCCTTCCTGGACTGCCCGGATCGCGGGCTCTGGGTGGTCGCCGATGGCATGGGCGGGCACCAGGCCGGCGAC
CTGGCCAGCCGGATGATCGTCACCAGCCTGGCGGAACTGCCGGCCCGGGCGGGATTCGACGAGCGCCTGAAC
GCGATGCGCCAGTGCCTGCACTGGCTCAACCGGCGCCTGGGCGAGGAACTCACCCTCAGCGCCGAACGCGGC
GACAGGATCATCGGCAGTACGGTGGTGGCGCTGGTCGTGGAGGGTTCGCGGGCGGCCTGCGTGTGGGTCGGC
GACAGCCGCTGCTACCTGTGGCGCGGCCAGCGGCTGTACCAGCTGTCCCGCGACCACTCGCTGTTGCAGCGA
CTGGTCGACGAACGGCGGATGGATATCGAGCAGGCGCGCGCCTATCCCTCGGCGCGCGCGCTGACCCGTGCC
GTCGGCGCCAGCGAACAACTGGTGCTGGACGTGTTGGAACTGGAGGTGCATCCCGGTGATGTCTTCCTGCTC
TGCAGCGACGGGCTCTACGAAGAGCTGAGCGCCGATGCGCTGGGCCGCGCGTTGAGCCTGGCATCGCCGCAG
GTGGCGGTGGAGCGGCTGTTCGACGGCGCCCTGAGCGGCGCCGCGCGGGACAACCTGACGGCCGTGGTGATC
CGTCAATGA
Translation:
MQRTEPWRSAARTDRGKVRARNEDAFLDCPDRGLWVVADGMGGHQAGDLASRMIVTSLAELPARAGFDERLN
AMRQCLHWLNRRLGEELTLSAERGDRIIGSTVVALVVEGSRAACVWVGDSRCYLWRGQRLYQLSRDHSLLQR
LVDERRMDIEQARAYPSARALTRAVGASEQLVLDVLELEVHPGDVFLLCSDGLYEELSADALGRALSLASPQ
VAVERLFDGALSGAARDNLTAVVIRQ*
AnnotationID:3342GeneID:3334
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 07:07:31
Gene Name:stp1
Confidence Code:1
GeneProduct:serine/threonine protein phosphatase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0631,cd00143
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:3.1.3.2, 3.1.3.48
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58839.1| (AE016875) serine/threonine phosphoprotein phosphatase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 242

 Score =  381 bits (978), Expect = e-105
 Identities = 184/237 (77%), Positives = 210/237 (88%)








 
Structural Features:
COG0631, PTC1, Serine/threonine protein phosphatase 
[Signal transduction mechanisms]
CD-Length = 262 residues,  95.0% aligned
Score =  221 bits (563), Expect = 8e-59
Identities = 95/249 (38%), Positives = 138/249 (55%), Gaps = 8/249 (3%)

cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain
CD-Length = 254 residues,  99.6% aligned
Score =  154 bits (390), Expect = 1e-38
Identities = 79/255 (30%), Positives = 112/255 (43%), Gaps = 23/255 (9%)








   
Genomic Context:






   
Comment:


















    ReferenceID:6671




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23813




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37177




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3334_cdd.html


    		




 
URL:

















    ReferenceID:37878




  
Author/Investigator(s):
        Mukhopadhyay S, Kapatral V, Xu W, Chakrabarty AM.





  
Title:
        Characterization of a Hank's type serine/threonine kinase and serine/threonine phosphoprotein phosphatase in Pseudomonas aeruginosa.




  
PubMed:
        10542161


MedLine:
        




    
Source:
J Bacteriol. 1999 Nov;181(21):6615-22.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10542161









           
Homologs By Global Alignment 

           

       



     
Gene ID:3334
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5348
                           PA1670_tr
                           translation of PA1670
                           242
                           99.58
                           99.58
                           0
                           1229.0
     

     
     
150044
                           gb|AAG05059.1|AE004594_11
                           (AE004594) serine/threonine phosphoprotein phosphatase Stp1 [Pseudomonas aeruginosa PAO1]
                           242
                           99.58
                           99.58
                           0
                           1229.0
     

     
     
150045
                           gb|AAO58839.1|
                           (AE016875) serine/threonine phosphoprotein phosphatase [Pseudomonas syringae pv. tomato str. DC3000]
                           242
                           76.44
                           87.19
                           0
                           978.0
     

     
     
5349
                           PA0075_tr
                           translation of PA0075
                           245
                           44.48
                           57.95
                           6
                           490.0
     

     
     
150046
                           gb|AAG03465.1|AE004446_13
                           (AE004446) probable phosphoprotein phosphatase [Pseudomonas aeruginosa PAO1]
                           245
                           44.48
                           57.95
                           6
                           490.0
     

     






      

          
GC ORFID: 46336How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1670Glimmer Score: 

          
Start: 1141695Stop: 1142423

          
Length: 729


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1670 translation of PA1670Homolog Bit Score 478.0

          
Other Homologs:  t_PA0075 (ORF: BLASTX 194.0), t_PA1670 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACGCACCGAGCCCTGGCGCAGCGCGGCGCGCACGGATCGCGGCAAGGTCCGCGCGCGCAACGAGGAT 
GCCTTCCTGGACTGCCCGGATCGCGGGCTCTGGGTGGTCGCCGATGGCATGGGCGGGCACCAGGCCGGCGAC 
CTGGCCAGCCGGATGATCGTCACCAGCCTGGCGGAACTGCCGGCCCGGGCGGGATTCGACGAGCGCCTGAAC 
GCGATGCGCCAGTGCCTGCACTGGCTCAACCGGCGCCTGGGCGAGGAACTCACCCTCAGCGCCGAACGCGGC 
GACAGGATCATCGGCAGTACGGTGGTGGCGCTGGTCGTGGAGGGTTCGCGGGCGGCCTGCGTGTGGGTCGGC 
GACAGCCGCTGCTACCTGTGGCGCGGCCAGCGGCTGTACCAGCTGTCCCGCGACCACTCGCTGTTGCAGCGA 
CTGGTCGACGAACGGCGGATGGATATCGAGCAGGCGCGCGCCTATCCCTCGGCGCGCGCGCTGACCCGTGCC 
GTCGGCGCCAGCGAACAACTGGTGCTGGACGTGTTGGAACTGGAGGTGCATCCCGGTGATGTCTTCCTGCTC 
TGCAGCGACGGGCTCTACGAAGAGCTGAGCGCCGATGCGCTGGGCCGCGCGTTGAGCCTGGCATCGCCGCAG 
GTGGCGGTGGAGCGGCTGTTCGACGGCGCCCTGAGCGGCGCCGCGCGGGACAACCTGACGGCCGTGGTGATC 
CGTCAATGA